BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636641.2.1
(1326 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidas... 48 2e-005
gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidas... 48 2e-005
gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Aven... 40 0.005
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
complete cds
Length = 1191
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcgg 582
||||||||||||||||||||||||
Sbjct: 780 gctctcgggcgcgcacaccatcgg 803
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 958 gctgacggggacgcagggcgagatcaggc 986
|||||| |||||||||||| |||||||||
Sbjct: 1134 gctgaccgggacgcagggccagatcaggc 1162
Score = 36.2 bits (18), Expect = 0.077
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 183 tgcacttccatgactgctttgt 204
|||||||||| |||||||||||
Sbjct: 188 tgcacttccacgactgctttgt 209
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
complete cds
Length = 1197
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcgg 582
||||||||||||||||||||||||
Sbjct: 786 gctctcgggcgcgcacaccatcgg 809
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 958 gctgacggggacgcagggcgagatcaggc 986
|||||| |||||||||||| |||||||||
Sbjct: 1140 gctgaccgggacgcagggccagatcaggc 1168
Score = 36.2 bits (18), Expect = 0.077
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 183 tgcacttccatgactgctttgt 204
|||||||||| |||||||||||
Sbjct: 188 tgcacttccacgactgctttgt 209
>gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A06_B11, mRNA sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.005
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcgg 582
|||||||||||||||||| |||||
Sbjct: 125 gctctcgggcgcgcacacgatcgg 148
Score = 36.2 bits (18), Expect = 0.077
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 965 gggacgcagggcgagatcaggc 986
||||||||||| ||||||||||
Sbjct: 480 gggacgcagggggagatcaggc 501
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2630
Number of Sequences: 8143
Number of extensions: 2630
Number of successful extensions: 679
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 14
length of query: 1326
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1310
effective length of database: 4,572,175
effective search space: 5989549250
effective search space used: 5989549250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)