BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228901.3.1
(1173 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814708.1|CN814708 HRO4501_F06_K11ZS5 Lib AA071E1X Aven... 34 0.27
gb|CN816402.1|CN816402 HRO4520_D01_H02ZS5 Lib AA071E1X Aven... 34 0.27
gb|CN817096.1|CN817096 HRO4528_B10_D20ZS5 Lib AA071E1X Aven... 34 0.27
gb|CN820751.1|CN820751 HRO4414_C08_E16ZS5 Lib AA069E1X Aven... 34 0.27
>gb|CN814708.1|CN814708 HRO4501_F06_K11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_F06_K11, mRNA sequence
Length = 612
Score = 34.2 bits (17), Expect = 0.27
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 924 aattattttaagaaacataagaatt 948
|||||| || |||||||||||||||
Sbjct: 565 aattatgtttagaaacataagaatt 541
>gb|CN816402.1|CN816402 HRO4520_D01_H02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_D01_H02, mRNA sequence
Length = 612
Score = 34.2 bits (17), Expect = 0.27
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 924 aattattttaagaaacataagaatt 948
|||||| || |||||||||||||||
Sbjct: 565 aattatgtttagaaacataagaatt 541
>gb|CN817096.1|CN817096 HRO4528_B10_D20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_B10_D20, mRNA sequence
Length = 612
Score = 34.2 bits (17), Expect = 0.27
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 924 aattattttaagaaacataagaatt 948
|||||| || |||||||||||||||
Sbjct: 565 aattatgtttagaaacataagaatt 541
>gb|CN820751.1|CN820751 HRO4414_C08_E16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_C08_E16, mRNA
sequence
Length = 499
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 731 tgtgtttatatacatat 747
|||||||||||||||||
Sbjct: 365 tgtgtttatatacatat 381
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2933
Number of Sequences: 8143
Number of extensions: 2933
Number of successful extensions: 806
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 4
length of query: 1173
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1157
effective length of database: 4,572,175
effective search space: 5290006475
effective search space used: 5290006475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)