BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Aven... 123 2e-028
gb|CN817731.1|CN817731 HRO4453_G05_N09ZS5 Lib AA070E1X Aven... 34 0.13
gb|CN820213.1|CN820213 HRO4412_F06_L12ZS5 Lib AA069E1X Aven... 34 0.13
>gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_D07_H13, mRNA sequence
Length = 735
Score = 123 bits (62), Expect = 2e-028
Identities = 143/170 (84%)
Strand = Plus / Plus
Query: 17 gaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgaccca 76
||||| |||||||| ||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 291 gaagtttggcaggtaaaagctggttcagtttttgacaacattctcatttgtgatgacccg 350
Query: 77 gactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaaggag 136
|| ||||||| | | || || ||||| | | |||||||||||||||||||||||||
Sbjct: 351 gagtatgcaaaaagagctgctgaagaaacatggggtgcaaataaggaggctgaaaaggag 410
Query: 137 gcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
|| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 411 gcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 460
>gb|CN817731.1|CN817731 HRO4453_G05_N09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_G05_N09, mRNA sequence
Length = 730
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 171 gagaagaagaggaagca 187
|||||||||||||||||
Sbjct: 246 gagaagaagaggaagca 262
>gb|CN820213.1|CN820213 HRO4412_F06_L12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_F06_L12, mRNA
sequence
Length = 597
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 362 cacgtgcaaaacttgta 378
|||||||||||||||||
Sbjct: 528 cacgtgcaaaacttgta 512
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1916
Number of Sequences: 8143
Number of extensions: 1916
Number of successful extensions: 427
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 5
length of query: 595
length of database: 4,702,463
effective HSP length: 16
effective length of query: 579
effective length of database: 4,572,175
effective search space: 2647289325
effective search space used: 2647289325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)