BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 8010573.2.1
         (1223 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819887.1|CN819887  HRO4407_D04_H07ZS5 Lib AA069E1X Aven...    54   3e-007
gb|CN820999.1|CN820999  HRO4422_D06_G12ZS5 Lib AA069E1X Aven...    48   2e-005
gb|CN819667.1|CN819667  HRO4402_G07_M14ZS5 Lib AA069E1X Aven...    40   0.005
gb|CN821226.1|CN821226  HRO4428_H09_P18ZS5 Lib AA069E1X Aven...    40   0.005
gb|CN821378.1|CN821378  HRO4424_F06_L12ZS5 Lib AA069E1X Aven...    38   0.018
gb|CN814833.1|CN814833  HRO4503_A02_B03ZS5 Lib AA071E1X Aven...    34   0.28 
gb|CN816589.1|CN816589  HRO4522_E06_I12ZS5 Lib AA071E1X Aven...    34   0.28 

>gb|CN819887.1|CN819887 HRO4407_D04_H07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4407_D04_H07, mRNA
           sequence
          Length = 164

 Score = 54.0 bits (27), Expect = 3e-007
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 882 ctacatgatctacaactactgcaccga 908
           |||||||||||||||||||||||||||
Sbjct: 59  ctacatgatctacaactactgcaccga 85



>gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_D06_G12, mRNA
           sequence
          Length = 324

 Score = 48.1 bits (24), Expect = 2e-005
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 885 catgatctacaactactgcaccga 908
           ||||||||||||||||||||||||
Sbjct: 114 catgatctacaactactgcaccga 137



>gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4402_G07_M14, mRNA
           sequence
          Length = 393

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 889 atctacaactactgcaccga 908
           ||||||||||||||||||||
Sbjct: 121 atctacaactactgcaccga 140



>gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4428_H09_P18, mRNA
           sequence
          Length = 425

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 889 atctacaactactgcaccga 908
           ||||||||||||||||||||
Sbjct: 165 atctacaactactgcaccga 184



>gb|CN821378.1|CN821378 HRO4424_F06_L12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4424_F06_L12, mRNA
           sequence
          Length = 356

 Score = 38.2 bits (19), Expect = 0.018
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 886 atgatctacaactactgcaccga 908
           ||||||||||||||||| |||||
Sbjct: 102 atgatctacaactactgtaccga 124



>gb|CN814833.1|CN814833 HRO4503_A02_B03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_A02_B03, mRNA sequence
          Length = 626

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 141 ggcggtgctgctgctgc 157
           |||||||||||||||||
Sbjct: 609 ggcggtgctgctgctgc 625



>gb|CN816589.1|CN816589 HRO4522_E06_I12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4522_E06_I12, mRNA sequence
          Length = 272

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 86  accgatcgatcgatcga 102
           |||||||||||||||||
Sbjct: 56  accgatcgatcgatcga 72



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2413
Number of Sequences: 8143
Number of extensions: 2413
Number of successful extensions: 683
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 14
length of query: 1223
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1207
effective length of database: 4,572,175
effective search space: 5518615225
effective search space used: 5518615225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)