BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010462.2.1
(638 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA ... 94 2e-019
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 88 1e-017
gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Aven... 86 4e-017
gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old... 80 3e-015
gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Aven... 70 3e-012
gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Aven... 62 6e-010
gb|AY618690.1| Avena longiglumis strain CC4719 cycloartenol... 36 0.037
gb|AY618691.1| Avena longiglumis strain CC7250 cycloartenol... 36 0.037
gb|AY618692.1| Avena prostrata strain CC7060 cycloartenol s... 36 0.037
gb|AY618693.1| Avena strigosa strain CI3815 cycloartenol sy... 36 0.037
gb|AY618694.1| Avena ventricosa strain CAV2835 cycloartenol... 36 0.037
emb|AJ311790.1|AST311790 Avena strigosa mRNA for cycloarten... 36 0.037
gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene ... 34 0.14
>gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO215_WHE2D0041, mRNA sequence
Length = 341
Score = 93.7 bits (47), Expect = 2e-019
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctg 305
||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct: 323 catcgacccgctgctggagtgcctcaaggagtggaacggcgagcccttgccactctgctg 264
Query: 306 agc 308
|||
Sbjct: 263 agc 261
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 87.7 bits (44), Expect = 1e-017
Identities = 158/192 (82%), Gaps = 3/192 (1%)
Strand = Plus / Plus
Query: 105 gatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccga 164
||||| |||| || |||| | |||||||||||| ||||| ||||||||| | ||| ||
Sbjct: 138 gatcaaggagagcaggtctttcccgctgtaccgcttcgtccgcgaggagctgggctgcgt 197
Query: 165 gtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtgg 224
|||||| |||||||||| | ||||||| ||||||||| |||||||||| || |||
Sbjct: 198 gtacctcaccggcgagaaactcctgtccccc-ggcgaggagtgcaacaaggtgttcctgg 256
Query: 225 cccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacgg 284
| |||| |||| |||||| | |||||||| |||| |||||||||||||||||||||||
Sbjct: 257 gc-atcagccagggcaagctc-atcgaccccatgctggagtgcctcaaggagtggaacgg 314
Query: 285 cgcgcccctgcc 296
|| |||||||||
Sbjct: 315 cgagcccctgcc 326
>gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_B04_D08, mRNA
sequence
Length = 371
Score = 85.7 bits (43), Expect = 4e-017
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 262 gagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagc 308
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10 gagtgcctcaaggagtggaacggcgagcccctgccgctctgctgagc 56
>gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old Avena sativa cDNA clone VRG86,
mRNA sequence
Length = 936
Score = 79.8 bits (40), Expect = 3e-015
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 226 ccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggc 285
|||| |||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct: 352 ccatgaaccagggcaagcac-atcgacgcgctgcttgagtgcctcaaggagtggaacggc 294
Query: 286 gcgcccctgccgctct 301
| ||| ||||| ||||
Sbjct: 293 gagccactgcctctct 278
>gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_E07_J13, mRNA sequence
Length = 418
Score = 69.9 bits (35), Expect = 3e-012
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct: 55 catcgaccccatgctggagtgcctcaaggagtggaacggcgagcccctgcc 105
>gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_D04_H08, mRNA sequence
Length = 417
Score = 61.9 bits (31), Expect = 6e-010
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||| | ||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 57 catcgacgctctgcttgagtgcctcaaggagtggaacggtgagcccctgcc 107
>gb|AY618690.1| Avena longiglumis strain CC4719 cycloartenol synthase gene,
complete cds
Length = 2280
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 512 cgacgtgcgcgttcttgg 529
||||||||||||||||||
Sbjct: 67 cgacgtgcgcgttcttgg 50
>gb|AY618691.1| Avena longiglumis strain CC7250 cycloartenol synthase gene,
complete cds
Length = 2280
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 512 cgacgtgcgcgttcttgg 529
||||||||||||||||||
Sbjct: 67 cgacgtgcgcgttcttgg 50
>gb|AY618692.1| Avena prostrata strain CC7060 cycloartenol synthase gene, complete
cds
Length = 2280
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 512 cgacgtgcgcgttcttgg 529
||||||||||||||||||
Sbjct: 67 cgacgtgcgcgttcttgg 50
>gb|AY618693.1| Avena strigosa strain CI3815 cycloartenol synthase gene, complete
cds
Length = 2280
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 512 cgacgtgcgcgttcttgg 529
||||||||||||||||||
Sbjct: 67 cgacgtgcgcgttcttgg 50
>gb|AY618694.1| Avena ventricosa strain CAV2835 cycloartenol synthase gene,
complete cds
Length = 2280
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 512 cgacgtgcgcgttcttgg 529
||||||||||||||||||
Sbjct: 67 cgacgtgcgcgttcttgg 50
>emb|AJ311790.1|AST311790 Avena strigosa mRNA for cycloartenol synthase (cs1 gene)
Length = 2280
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 512 cgacgtgcgcgttcttgg 529
||||||||||||||||||
Sbjct: 67 cgacgtgcgcgttcttgg 50
>gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene cluster, complete
sequence
Length = 10607
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 44 cccaaggaggtggaggc 60
|||||||||||||||||
Sbjct: 4754 cccaaggaggtggaggc 4770
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1462
Number of Sequences: 8143
Number of extensions: 1462
Number of successful extensions: 576
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 18
length of query: 638
length of database: 4,702,463
effective HSP length: 16
effective length of query: 622
effective length of database: 4,572,175
effective search space: 2843892850
effective search space used: 2843892850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)