BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705280.3.1
(980 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815605.1|CN815605 HRO4513_E06_I11ZS5 Lib AA071E1X Aven... 30 3.5
gb|CN818901.1|CN818901 HRO4473_C01_XXXZS5 Lib AA070E1X Aven... 30 3.5
gb|CN819021.1|CN819021 HRO4455_F06_K11ZS5 Lib AA070E1X Aven... 30 3.5
gb|CN821507.1|CN821507 HRO4426_B03_C06ZS5 Lib AA069E1X Aven... 30 3.5
gb|CN821604.1|CN821604 HRO4408_B10_D20ZS5 Lib AA069E1X Aven... 30 3.5
>gb|CN815605.1|CN815605 HRO4513_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_E06_I11, mRNA sequence
Length = 870
Score = 30.2 bits (15), Expect = 3.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 574 aacggcagcagctgt 588
|||||||||||||||
Sbjct: 49 aacggcagcagctgt 63
>gb|CN818901.1|CN818901 HRO4473_C01_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_C01_XXX, mRNA sequence
Length = 635
Score = 30.2 bits (15), Expect = 3.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 303 tgcttccttttgctc 317
|||||||||||||||
Sbjct: 309 tgcttccttttgctc 295
>gb|CN819021.1|CN819021 HRO4455_F06_K11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_F06_K11, mRNA sequence
Length = 485
Score = 30.2 bits (15), Expect = 3.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 350 ctggggtggcttgctgcca 368
|||| ||||||||||||||
Sbjct: 145 ctggtgtggcttgctgcca 163
>gb|CN821507.1|CN821507 HRO4426_B03_C06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_B03_C06, mRNA
sequence
Length = 684
Score = 30.2 bits (15), Expect = 3.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 909 tctcctcatccttgg 923
|||||||||||||||
Sbjct: 408 tctcctcatccttgg 422
>gb|CN821604.1|CN821604 HRO4408_B10_D20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_B10_D20, mRNA
sequence
Length = 877
Score = 30.2 bits (15), Expect = 3.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 666 ccgctgcaattgctc 680
|||||||||||||||
Sbjct: 724 ccgctgcaattgctc 710
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2414
Number of Sequences: 8143
Number of extensions: 2414
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 5
length of query: 980
length of database: 4,702,463
effective HSP length: 16
effective length of query: 964
effective length of database: 4,572,175
effective search space: 4407576700
effective search space used: 4407576700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)