BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK780284.1|CK780284 umn856 UMN cDNA from oat Avena sativ... 32 0.48
gb|CN815622.1|CN815622 HRO4513_F12_K23ZS5 Lib AA071E1X Aven... 32 0.48
gb|CN816932.1|CN816932 HRO4526_D05_G10ZS5 Lib AA071E1X Aven... 32 0.48
gb|CN819798.1|CN819798 HRO4404_B10_D20ZS5 Lib AA069E1X Aven... 32 0.48
gb|CN820086.1|CN820086 HRO4410_H09_O18ZS5 Lib AA069E1X Aven... 32 0.48
gb|AF118560.1|AF118560 Avena fatua barley protein Z homolog... 32 0.48
>gb|CK780284.1|CK780284 umn856 UMN cDNA from oat Avena sativa cDNA clone JMT17 5', mRNA
sequence
Length = 578
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 260 gcggggacgtggaagg 275
||||||||||||||||
Sbjct: 64 gcggggacgtggaagg 79
>gb|CN815622.1|CN815622 HRO4513_F12_K23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_F12_K23, mRNA sequence
Length = 870
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 157 agagaagatgaagcgg 172
||||||||||||||||
Sbjct: 356 agagaagatgaagcgg 371
>gb|CN816932.1|CN816932 HRO4526_D05_G10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_D05_G10, mRNA sequence
Length = 553
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 485 gggttctgcaccaccg 500
||||||||||||||||
Sbjct: 110 gggttctgcaccaccg 95
>gb|CN819798.1|CN819798 HRO4404_B10_D20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_B10_D20, mRNA
sequence
Length = 568
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 485 gggttctgcaccaccg 500
||||||||||||||||
Sbjct: 121 gggttctgcaccaccg 106
>gb|CN820086.1|CN820086 HRO4410_H09_O18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_H09_O18, mRNA
sequence
Length = 619
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 485 gggttctgcaccaccg 500
||||||||||||||||
Sbjct: 154 gggttctgcaccaccg 139
>gb|AF118560.1|AF118560 Avena fatua barley protein Z homolog mRNA, partial cds
Length = 984
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 389 aacctcttcgccaagc 404
||||||||||||||||
Sbjct: 442 aacctcttcgccaagc 427
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1428
Number of Sequences: 8143
Number of extensions: 1428
Number of successful extensions: 354
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 6
length of query: 542
length of database: 4,702,463
effective HSP length: 16
effective length of query: 526
effective length of database: 4,572,175
effective search space: 2404964050
effective search space used: 2404964050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)