BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4005867.2.1
(1967 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815212.1|CN815212 HRO4507_B05_D09ZS5 Lib AA071E1X Aven... 36 0.11
gb|CN814769.1|CN814769 HRO4502_C09_E18ZS5 Lib AA071E1X Aven... 34 0.45
gb|CN819369.1|CN819369 HRO4405_B08_C15ZS5 Lib AA069E1X Aven... 34 0.45
gb|CN821019.1|CN821019 HRO4422_F04_K08ZS5 Lib AA069E1X Aven... 34 0.45
>gb|CN815212.1|CN815212 HRO4507_B05_D09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_B05_D09, mRNA sequence
Length = 213
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 522 cgagaagctcaaggccga 539
||||||||||||||||||
Sbjct: 80 cgagaagctcaaggccga 97
>gb|CN814769.1|CN814769 HRO4502_C09_E18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_C09_E18, mRNA sequence
Length = 623
Score = 34.2 bits (17), Expect = 0.45
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1771 atgtttgtgtgtatgta 1787
|||||||||||||||||
Sbjct: 443 atgtttgtgtgtatgta 459
>gb|CN819369.1|CN819369 HRO4405_B08_C15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_B08_C15, mRNA
sequence
Length = 709
Score = 34.2 bits (17), Expect = 0.45
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1826 ggagggctgacatttgt 1842
|||||||||||||||||
Sbjct: 112 ggagggctgacatttgt 96
>gb|CN821019.1|CN821019 HRO4422_F04_K08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_F04_K08, mRNA
sequence
Length = 712
Score = 34.2 bits (17), Expect = 0.45
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1826 ggagggctgacatttgt 1842
|||||||||||||||||
Sbjct: 94 ggagggctgacatttgt 78
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4655
Number of Sequences: 8143
Number of extensions: 4655
Number of successful extensions: 1278
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 4
length of query: 1967
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1950
effective length of database: 4,564,032
effective search space: 8899862400
effective search space used: 8899862400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)