BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818455.1|CN818455 HRO4460_E06_I12ZS5 Lib AA070E1X Aven... 44 1e-004
gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Aven... 36 0.032
gb|CN815727.1|CN815727 HRO4514_H03_O06ZS5 Lib AA071E1X Aven... 32 0.50
gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Aven... 32 0.50
gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Aven... 32 0.50
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 32 0.50
gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocoty... 32 0.50
>gb|CN818455.1|CN818455 HRO4460_E06_I12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_E06_I12, mRNA sequence
Length = 759
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 358 ggcggcggcggcggcctcgagc 379
||||||||||||||||||||||
Sbjct: 83 ggcggcggcggcggcctcgagc 62
>gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_D09_G17, mRNA sequence
Length = 450
Score = 36.2 bits (18), Expect = 0.032
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 355 cccggcggcggcggcggc 372
||||||||||||||||||
Sbjct: 47 cccggcggcggcggcggc 64
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggc 372
||||||||||||||||
Sbjct: 52 cggcggcggcggcggc 67
>gb|CN815727.1|CN815727 HRO4514_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_H03_O06, mRNA sequence
Length = 836
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggc 372
||||||||||||||||
Sbjct: 79 cggcggcggcggcggc 64
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A07_B14, mRNA sequence
Length = 491
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 356 ccggcggcggcggcgg 371
||||||||||||||||
Sbjct: 70 ccggcggcggcggcgg 85
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
Length = 683
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggc 372
||||||||||||||||
Sbjct: 28 cggcggcggcggcggc 43
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggc 372
||||||||||||||||
Sbjct: 25 cggcggcggcggcggc 40
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 358 ggcggcggcggcggcc 373
||||||||||||||||
Sbjct: 425 ggcggcggcggcggcc 440
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
Length = 3422
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggc 372
||||||||||||||||
Sbjct: 361 cggcggcggcggcggc 376
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1354
Number of Sequences: 8143
Number of extensions: 1354
Number of successful extensions: 456
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 30
length of query: 559
length of database: 4,702,463
effective HSP length: 16
effective length of query: 543
effective length of database: 4,572,175
effective search space: 2482691025
effective search space used: 2482691025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)