BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829517.2.1
(913 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818645.1|CN818645 HRO4467_E04_I07ZS5 Lib AA070E1X Aven... 115 7e-026
gb|CN816947.1|CN816947 HRO4526_E12_I24ZS5 Lib AA071E1X Aven... 60 4e-009
gb|CN817117.1|CN817117 HRO4528_D08_H16ZS5 Lib AA071E1X Aven... 60 4e-009
gb|CN817427.1|CN817427 HRO4465_G11_N21ZS5 Lib AA070E1X Aven... 44 2e-004
gb|CN815761.1|CN815761 HRO4510_C01_E02ZS5 Lib AA071E1X Aven... 34 0.21
gb|CN815901.1|CN815901 HRO4511_G03_N05ZS5 Lib AA071E1X Aven... 34 0.21
>gb|CN818645.1|CN818645 HRO4467_E04_I07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_E04_I07, mRNA sequence
Length = 478
Score = 115 bits (58), Expect = 7e-026
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 475 gccgggaagtatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccag 534
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 gccgggaagtatgctacaggagatgaagtccaactggcagatgtattccttgcaccccag 94
Query: 535 at 536
||
Sbjct: 95 at 96
Score = 50.1 bits (25), Expect = 4e-006
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 615 acaccctgcgtttgaagcagcgctccctg 643
|||||||||||||||||| ||||||||||
Sbjct: 175 acaccctgcgtttgaagctgcgctccctg 203
>gb|CN816947.1|CN816947 HRO4526_E12_I24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E12_I24, mRNA sequence
Length = 867
Score = 60.0 bits (30), Expect = 4e-009
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| | | || |||||||| |||||||||||||| || |||||
Sbjct: 65 cagctcctgctctcaccgtgtcaggatagctctcaacctcaaaggtgtggactatgagta 124
Query: 114 caaggc 119
||||||
Sbjct: 125 caaggc 130
Score = 50.1 bits (25), Expect = 4e-006
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 493 ggagatgaagtccaactggcagatgtattccttgcaccccagatctatgcagccatt 549
|||||||||||||| ||| |||||| ||||| ||||| |||||| |||| ||||||
Sbjct: 483 ggagatgaagtccatttgggagatgtgttcctagcaccacagatccatgccgccatt 539
>gb|CN817117.1|CN817117 HRO4528_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_D08_H16, mRNA sequence
Length = 802
Score = 60.0 bits (30), Expect = 4e-009
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| | | || |||||||| |||||||||||||| || |||||
Sbjct: 49 cagctcctgctctcaccgtgtcaggatagctctcaacctcaaaggtgtggactatgagta 108
Query: 114 caaggc 119
||||||
Sbjct: 109 caaggc 114
Score = 50.1 bits (25), Expect = 4e-006
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 493 ggagatgaagtccaactggcagatgtattccttgcaccccagatctatgcagccatt 549
|||||||||||||| ||| |||||| ||||| ||||| |||||| |||| ||||||
Sbjct: 467 ggagatgaagtccatttgggagatgtgttcctagcaccacagatccatgccgccatt 523
>gb|CN817427.1|CN817427 HRO4465_G11_N21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_G11_N21, mRNA sequence
Length = 688
Score = 44.1 bits (22), Expect = 2e-004
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 496 gatgaagtccaactggcagatgtattccttgcaccccagatc 537
|||||||||||| ||| |||||| || || ||||||||||||
Sbjct: 266 gatgaagtccaaatgggagatgtgtttctagcaccccagatc 307
>gb|CN815761.1|CN815761 HRO4510_C01_E02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_C01_E02, mRNA sequence
Length = 628
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 238 ctgtatttggaggacaa 254
|||||||||||||||||
Sbjct: 177 ctgtatttggaggacaa 161
>gb|CN815901.1|CN815901 HRO4511_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_G03_N05, mRNA sequence
Length = 323
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 825 gatctggccgtcgtcct 841
|||||||||||||||||
Sbjct: 43 gatctggccgtcgtcct 27
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2243
Number of Sequences: 8143
Number of extensions: 2243
Number of successful extensions: 610
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 10
length of query: 913
length of database: 4,702,463
effective HSP length: 16
effective length of query: 897
effective length of database: 4,572,175
effective search space: 4101240975
effective search space used: 4101240975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)