BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748516.2.1
(1155 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 111 1e-024
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 111 bits (56), Expect = 1e-024
Identities = 143/172 (83%)
Strand = Plus / Minus
Query: 244 actggacgaaggagcggtagtcgacgtcggggatgtagttggccgggatgacgttcttgg 303
||||||||||||||||||||||| || ||| | ||||||| ||||||| ||| ||||
Sbjct: 253 actggacgaaggagcggtagtcggtgttgggcctccagttggctgggatgatgttgttgg 194
Query: 304 ccaccagctgcctgccggactcgttggtgatgcgcatggagaaggggccacggagcgggc 363
| || |||||| ||||||| ||| ||||||||||||||||||| || | |||| ||
Sbjct: 193 cgacgagctgcttgccggagtcgctggtgatgcgcatggagaatggcgcctggaggcggt 134
Query: 364 ggttggggtcgatcctccagatggagccccaggactcgtgcatgggctccca 415
|||||| ||| |||||||||||||| |||||||||||| |||| ||| ||||
Sbjct: 133 ggttggagtccatcctccagatggacccccaggactcgcgcatcggcgccca 82
Score = 36.2 bits (18), Expect = 0.067
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 66 tggttacacactggtaat 83
||||||||||||||||||
Sbjct: 580 tggttacacactggtaat 563
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2525
Number of Sequences: 8143
Number of extensions: 2525
Number of successful extensions: 814
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 4
length of query: 1155
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1139
effective length of database: 4,572,175
effective search space: 5207707325
effective search space used: 5207707325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)