BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713013.2.1
(3807 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 182 2e-045
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 174 4e-043
gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA ... 161 6e-039
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 143 1e-033
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 76 3e-013
gb|CN819706.1|CN819706 HRO4403_B11_D21ZS5 Lib AA069E1X Aven... 64 1e-009
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 60 2e-008
gb|CN815744.1|CN815744 HRO4510_A08_A16ZS5 Lib AA071E1X Aven... 40 0.014
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 182 bits (92), Expect = 2e-045
Identities = 197/232 (84%)
Strand = Plus / Minus
Query: 254 cctagcagttgatgccacacgtctgggtatccgggccagtgacgcgggtggtgaaggggt 313
||||||||||||| ||||| || ||| | | |||||||| ||| ||||| ||||| || |
Sbjct: 239 cctagcagttgatcccacaggtttggatgttcgggccagcgacccgggtagtgaatggat 180
Query: 314 cgatgcgaacccacagcaaggagaagatggacgccagcaggatggcccagacgacgacga 373
|||| ||||||||||||||||||||||| || || || ||||| |||||||||| |||||
Sbjct: 179 cgatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacga 120
Query: 374 tggtcggggtgcggttctgcctgcccatgaggcccttgaggaacgggtacaggtggacga 433
| ||||| |||||||| ||||||||| || ||||||||||||||||| | ||| || |
Sbjct: 119 tcgtcggtgtgcggtttgtcctgcccataagacccttgaggaacgggtataagtgaacaa 60
Query: 434 tgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 485
| ||||||||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 59 tcacccagaaggcaaagaagagctttccgaagagcggcccccatgattggta 8
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 174 bits (88), Expect = 4e-043
Identities = 238/288 (82%)
Strand = Plus / Minus
Query: 254 cctagcagttgatgccacacgtctgggtatccgggccagtgacgcgggtggtgaaggggt 313
||||||||||||| ||||| || ||| | | |||||||| || ||||| ||||| || |
Sbjct: 328 cctagcagttgatcccacaggtttggatgttcgggccagcaacccgggtagtgaatggat 269
Query: 314 cgatgcgaacccacagcaaggagaagatggacgccagcaggatggcccagacgacgacga 373
| || ||||||||||||||||||||||| || || || ||||| |||||||||| ||| |
Sbjct: 268 caatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacaa 209
Query: 374 tggtcggggtgcggttctgcctgcccatgaggcccttgaggaacgggtacaggtggacga 433
| ||||| |||||||| ||||||||| || ||||||||||| ||||| | ||| || |
Sbjct: 208 tcgtcggtgtgcggtttgtcctgcccataagacccttgaggaatgggtataagtgaacaa 149
Query: 434 tgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgctgt 493
| ||||||||||| ||||||||||| ||||| ||||| ||||| || ||||| || ||||
Sbjct: 148 tcacccagaaggcaaagaagagctttccgaacagcggcccccatgattggtaaccactgt 89
Query: 494 tgatggcgtaggagatgccggcgacgacgccgaccaggttgatgatca 541
||||||| |||||| |||| || || || ||||||| ||| |||||||
Sbjct: 88 tgatggcataggaggtgccagcaacaacaccgaccatgttaatgatca 41
>gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1430_WHE05G09, mRNA sequence
Length = 177
Score = 161 bits (81), Expect = 6e-039
Identities = 133/149 (89%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 1489 ttgcttgccttcttcctaccgccacatagtgatgacaagaaaccacccttcttctgctta 1548
||||||||||||||| | || ||||| |||||||||||||||||||||||||| |||||
Sbjct: 151 ttgcttgccttcttcttgcccccacacagtgatgacaagaaaccacccttctttggctta 92
Query: 1549 attgggggctcataaccatatagagctgttcggttgaaaacac-agccagttccgacata 1607
|||||||| ||||||||||| | |||||||| ||||||||||| | |||||||| |||||
Sbjct: 91 attgggggttcataaccatagatagctgttctgttgaaaacacaatccagttcccacata 32
Query: 1608 aactggtccttggatgccatcaagacctc 1636
|||||| ||||| ||||||||||| ||||
Sbjct: 31 aactggcccttgaatgccatcaaggcctc 3
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 143 bits (72), Expect = 1e-033
Identities = 126/144 (87%)
Strand = Plus / Minus
Query: 333 ggagaagatggacgccagcaggatggcccagacgacgacgatggtcggggtgcggttctg 392
|||||||||||| || ||||||| | ||||| ||||||||||| || |||||||| ||
Sbjct: 256 ggagaagatggaggcgagcaggacagaccagagcacgacgatggtgggcgtgcggttttg 197
Query: 393 cctgcccatgaggcccttgaggaacgggtacaggtggacgatgacccagaaggcgaagaa 452
||| |||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 196 cctccccatgagccccttgaggaatgggtagaggtggacgatgacccagaaggaaaagaa 137
Query: 453 gagcttgccgaagagcgggcccca 476
|||||| |||||||| ||||||||
Sbjct: 136 gagcttcccgaagagggggcccca 113
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 75.8 bits (38), Expect = 3e-013
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 254 cctagcagttgatgccacacgtctgggtatccgggccagtgacgcgggtggtgaaggggt 313
||||||||||||| ||||| || ||| | | |||||||| || ||||| ||||| || |
Sbjct: 128 cctagcagttgatcccacaggtttggatgttcgggccagcaacccgggtagtgaatggat 69
Query: 314 cgatgcgaacccacagcaaggagaagatggacgccagcaggatggcccagacga 367
| || ||||||||||||||||||||||| || || || ||||| ||||||||||
Sbjct: 68 caatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacga 15
>gb|CN819706.1|CN819706 HRO4403_B11_D21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B11_D21, mRNA
sequence
Length = 452
Score = 63.9 bits (32), Expect = 1e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 254 cctagcagttgatgccacacgtctgggtatccgggccagtgacgcgggtggtgaaggggt 313
||||||||||||| ||||| || ||| | | |||||||| ||| ||||| ||||| || |
Sbjct: 90 cctagcagttgatcccacaggtttggatgttcgggccagcgacccgggtagtgaatggat 31
Query: 314 cgatgcgaacccacagcaag 333
|||| |||||||||||||||
Sbjct: 30 cgatacgaacccacagcaag 11
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 60.0 bits (30), Expect = 2e-008
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 334 gagaagatggacgccagcaggatggcccagacgacgacgatggtcggggtgcggttctgc 393
|||| |||||| ||||| ||||| | |||||||| |||||| |||||||| | |||||||
Sbjct: 115 gagatgatggaggccaggaggattgaccagacgatgacgatcgtcggggtcctgttctgc 56
Query: 394 ctgcccatgaggcccttgaggaacgggtacaggtggac 431
|| || | || ||||||||||| ||||| || |||||
Sbjct: 55 cttccaagcagacccttgaggaatgggtagagatggac 18
>gb|CN815744.1|CN815744 HRO4510_A08_A16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_A08_A16, mRNA sequence
Length = 445
Score = 40.1 bits (20), Expect = 0.014
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 254 cctagcagttgatgccacacgtctgggtatccgggccagtgacgcgggtggtgaaggggt 313
||||||||||||| ||||| || ||| | | |||||||| || ||||| ||||| || |
Sbjct: 76 cctagcagttgatcccacaggtttggatgttcgggccagcaacccgggtagtgaatggat 17
Query: 314 cgatgcgaacccacag 329
| || |||||||||||
Sbjct: 16 caatacgaacccacag 1
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9053
Number of Sequences: 8143
Number of extensions: 9053
Number of successful extensions: 2666
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2657
Number of HSP's gapped (non-prelim): 8
length of query: 3807
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3790
effective length of database: 4,564,032
effective search space: 17297681280
effective search space used: 17297681280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)