BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713002.2.1
(923 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 507 e-144
gb|CN821029.1|CN821029 HRO4422_G03_M06ZS5 Lib AA069E1X Aven... 58 1e-008
gb|CN815155.1|CN815155 HRO4506_E03_I06ZS5 Lib AA071E1X Aven... 40 0.003
gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRN... 40 0.003
gb|AY277385.1| Avena sativa 1,3-beta glucanase (Oglc13) gen... 38 0.014
gb|CN816266.1|CN816266 HRO4518_G09_M18ZS5 Lib AA071E1X Aven... 34 0.21
gb|CN817926.1|CN817926 HRO4462_A11_B22ZS5 Lib AA070E1X Aven... 34 0.21
gb|CN818968.1|CN818968 HRO4474_F05_L10ZS5 Lib AA070E1X Aven... 34 0.21
gb|AF432516.1| Avena sativa clone As1822 transposon mariner... 34 0.21
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
Length = 1448
Score = 507 bits (256), Expect = e-144
Identities = 388/432 (89%)
Strand = Plus / Plus
Query: 15 ccgctcatggccaacatctacccgtacctggcctgggcatacaaccccagcgccatggac 74
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 601 ccgctcatggccaacatctacccgtacctggcctgggcctacaacccgagcgccatggac 660
Query: 75 atgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacggcgcctacgggtac 134
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 661 atgagctacgcgctcttcaccgcctccggcaccgtggtccaggacggcgcctacgggtac 720
Query: 135 cagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgggaaagaacggcggc 194
|||||||| ||||||||||| || |||||||||||| || ||||| ||| ||||||||
Sbjct: 721 cagaacctgttcgacaccacggtggacgccttctacacggcgatgggcaagcacggcggc 780
Query: 195 tccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgtccaggcc 254
|||| ||| ||| |||||||||||||| ||||||||||| | |||||||| ||
Sbjct: 781 gccggggtgaagctggtggtgtccgagagtgggtggccgtcggccggcggcgaggctgcg 840
Query: 255 acgccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacg 314
|| || |||||||| ||| | |||||||||||||| |||||||||||||| ||||| ||
Sbjct: 841 acccctgccaacgccaggatctacaaccagtacctgatcaaccacgtcgggcgcggcacc 900
Query: 315 ccgcgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaag 374
||||| |||||||||| ||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 901 ccgcggcacccgggcggcatcgagacctacgtgttcgccatgttcaacgagaaccagaag 960
Query: 375 gagagcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctacccc 434
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gacaacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctacccc 1020
Query: 435 atcagcttctga 446
||||||||||||
Sbjct: 1021 atcagcttctga 1032
>gb|CN821029.1|CN821029 HRO4422_G03_M06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G03_M06, mRNA
sequence
Length = 508
Score = 58.0 bits (29), Expect = 1e-008
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 102 ggcaccgtcgtgcaggacggcgcctacgggtaccagaacctcttcgacaccaccgtcgac 161
|||||||||||||||||||| | ||| |||||||||||||||||| || |||||||
Sbjct: 9 ggcaccgtcgtgcaggacggaagcaacgcctaccagaacctcttcgacgccctcgtcgac 68
Query: 162 gccttctac 170
||||||||
Sbjct: 69 accttctac 77
Score = 50.1 bits (25), Expect = 4e-006
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 330 gccatcgagacctacctcttctccatgttcaacgagaaccagaag 374
||||||||||| ||| | ||| ||||||||||||||||| |||||
Sbjct: 237 gccatcgagacatacatattcgccatgttcaacgagaacaagaag 281
Score = 44.1 bits (22), Expect = 2e-004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 208 tcgtggtgtccgagagcgggtggccgtccggcggcggc 245
|||| |||||||||||||||||||| || | |||||||
Sbjct: 115 tcgtcgtgtccgagagcgggtggccctcggccggcggc 152
Score = 42.1 bits (21), Expect = 9e-004
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 276 tacaaccagtacctcatcaaccacgtcgg 304
||||||||| ||||||||||||| |||||
Sbjct: 183 tacaaccagaacctcatcaaccatgtcgg 211
>gb|CN815155.1|CN815155 HRO4506_E03_I06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_E03_I06, mRNA sequence
Length = 333
Score = 40.1 bits (20), Expect = 0.003
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 333 atcgagacctacctcttctccatgttcaacgagaac 368
|||||||| ||| | ||| |||||||||||||||||
Sbjct: 37 atcgagacatacgtgttcgccatgttcaacgagaac 72
>gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRNA, partial cds
Length = 1045
Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 210 gtggtgtccgagagcgggtggccg 233
|||||||| |||||||||||||||
Sbjct: 679 gtggtgtcggagagcgggtggccg 702
Score = 38.2 bits (19), Expect = 0.014
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 352 ccatgttcaacgagaaccagaag 374
|||||||| ||||||||||||||
Sbjct: 821 ccatgttcgacgagaaccagaag 843
Score = 36.2 bits (18), Expect = 0.053
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 263 caacgcgagggtgtacaaccag 284
||||||||||| ||||||||||
Sbjct: 732 caacgcgagggcgtacaaccag 753
Score = 34.2 bits (17), Expect = 0.21
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 13 cgccgctcatggccaacatctaccc 37
||||||| ||||||||||||||||
Sbjct: 479 cgccgctgctggccaacatctaccc 503
>gb|AY277385.1| Avena sativa 1,3-beta glucanase (Oglc13) gene, complete cds
Length = 3281
Score = 38.2 bits (19), Expect = 0.014
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 263 caacgcgagggtgtacaaccagtacctcatcaaccacgtcggc 305
||||||||||| |||||||||| || ||| |||||||||||
Sbjct: 2977 caacgcgagggcgtacaaccaggggctgatcgaccacgtcggc 3019
Score = 38.2 bits (19), Expect = 0.014
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 210 gtggtgtccgagagcgggtggcc 232
|||||||| ||||||||||||||
Sbjct: 2924 gtggtgtcggagagcgggtggcc 2946
Score = 34.2 bits (17), Expect = 0.21
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 13 cgccgctcatggccaacatctaccc 37
||||||| ||||||||||||||||
Sbjct: 2724 cgccgctgctggccaacatctaccc 2748
>gb|CN816266.1|CN816266 HRO4518_G09_M18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_G09_M18, mRNA sequence
Length = 829
Score = 34.2 bits (17), Expect = 0.21
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 387 gagcagaactgggggctcttc 407
|||||||| ||||||||||||
Sbjct: 429 gagcagaagtgggggctcttc 449
>gb|CN817926.1|CN817926 HRO4462_A11_B22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_A11_B22, mRNA sequence
Length = 549
Score = 34.2 bits (17), Expect = 0.21
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 387 gagcagaactgggggctcttc 407
|||||||| ||||||||||||
Sbjct: 220 gagcagaagtgggggctcttc 240
>gb|CN818968.1|CN818968 HRO4474_F05_L10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_F05_L10, mRNA sequence
Length = 402
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 585 atgtatgtatatatatg 601
|||||||||||||||||
Sbjct: 260 atgtatgtatatatatg 276
>gb|AF432516.1| Avena sativa clone As1822 transposon mariner-like transposase gene,
partial cds
Length = 383
Score = 34.2 bits (17), Expect = 0.21
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 282 cagtacctcatcaaccacgtc 302
||||| |||||||||||||||
Sbjct: 292 cagtatctcatcaaccacgtc 312
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2083
Number of Sequences: 8143
Number of extensions: 2083
Number of successful extensions: 653
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 23
length of query: 923
length of database: 4,702,463
effective HSP length: 16
effective length of query: 907
effective length of database: 4,572,175
effective search space: 4146962725
effective search space used: 4146962725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)