BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Aven... 40 0.002
gb|CN814926.1|CN814926 HRO4504_A04_B08ZS5 Lib AA071E1X Aven... 36 0.033
gb|CN819119.1|CN819119 HRO4468_G10_M20ZS5 Lib AA070E1X Aven... 34 0.13
gb|CN821560.1|CN821560 HRO4426_G01_M02ZS5 Lib AA069E1X Aven... 34 0.13
gb|M83381.1|ASTAVEC A.sativa avenin mRNA, complete cds 34 0.13
gb|AY847064.1| Avena sativa Aux/IAA3 mRNA, partial cds 34 0.13
>gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_E10_J20, mRNA
sequence
Length = 776
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 478 cagcagcagcaacagcaaca 497
>gb|CN814926.1|CN814926 HRO4504_A04_B08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4504_A04_B08, mRNA sequence
Length = 345
Score = 36.2 bits (18), Expect = 0.033
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagca 47
||||||||||||||||||
Sbjct: 15 ccagcagcagcaacagca 32
>gb|CN819119.1|CN819119 HRO4468_G10_M20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_G10_M20, mRNA sequence
Length = 721
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagca 47
|||||||||||||||||
Sbjct: 259 cagcagcagcaacagca 275
>gb|CN821560.1|CN821560 HRO4426_G01_M02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_G01_M02, mRNA
sequence
Length = 675
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
||||||||||| |||||||||
Sbjct: 307 cagcagcagcagcagcaacaa 327
>gb|M83381.1|ASTAVEC A.sativa avenin mRNA, complete cds
Length = 875
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||| ||||||
Sbjct: 423 cagcagcagcaacaacaacaa 443
>gb|AY847064.1| Avena sativa Aux/IAA3 mRNA, partial cds
Length = 360
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagca 47
|||||||||||||||||
Sbjct: 127 cagcagcagcaacagca 111
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1242
Number of Sequences: 8143
Number of extensions: 1242
Number of successful extensions: 401
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 16
length of query: 571
length of database: 4,702,463
effective HSP length: 16
effective length of query: 555
effective length of database: 4,572,175
effective search space: 2537557125
effective search space used: 2537557125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)