BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670912.2.1
(844 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 129 4e-030
gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA ... 113 3e-025
gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old... 105 6e-023
gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Aven... 101 1e-021
gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Aven... 94 2e-019
gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Aven... 92 1e-018
gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Aven... 34 0.19
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 129 bits (65), Expect = 4e-030
Identities = 158/189 (83%)
Strand = Plus / Plus
Query: 373 gatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccga 432
|||||||||| || |||| | |||||||||||| ||||| ||||||||| | ||| ||
Sbjct: 138 gatcaaggagagcaggtctttcccgctgtaccgcttcgtccgcgaggagctgggctgcgt 197
Query: 433 gtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggc 492
|||||| ||||||||||| ||| |||||||||||| ||||||||| || |||
Sbjct: 198 gtacctcaccggcgagaaactcctgtcccccggcgaggagtgcaacaaggtgttcctggg 257
Query: 493 catcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcga 552
||||| |||| |||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 258 catcagccagggcaagctcatcgaccccatgctggagtgcctcaaggagtggaacggcga 317
Query: 553 gcccctgcc 561
|||||||||
Sbjct: 318 gcccctgcc 326
>gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO215_WHE2D0041, mRNA sequence
Length = 341
Score = 113 bits (57), Expect = 3e-025
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 501 agcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgc 560
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 333 agcggaagcacatcgacccgctgctggagtgcctcaaggagtggaacggcgagcccttgc 274
Query: 561 cgctctgctgagc 573
| |||||||||||
Sbjct: 273 cactctgctgagc 261
>gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old Avena sativa cDNA clone VRG86,
mRNA sequence
Length = 936
Score = 105 bits (53), Expect = 6e-023
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 478 caaggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaa 537
||||||| | || ||||| |||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 366 caaggtgtttgttgccatgaaccagggcaagcacatcgacgcgctgcttgagtgcctcaa 307
Query: 538 ggagtggaacggcgagcccctgccgctct 566
|||||||||||||||||| ||||| ||||
Sbjct: 306 ggagtggaacggcgagccactgcctctct 278
>gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_D04_H08, mRNA sequence
Length = 417
Score = 101 bits (51), Expect = 1e-021
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 455 aggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatc 514
||||| ||||| || ||| || |||||||| |||| ||||| ||| || |||||||||||
Sbjct: 1 aggtctcccggtgaagaggtggacaaggtgttcgttgccatgaacaagggcaagcacatc 60
Query: 515 gacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgcc 561
||| | ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 61 gacgctctgcttgagtgcctcaaggagtggaacggtgagcccctgcc 107
>gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_B04_D08, mRNA
sequence
Length = 371
Score = 93.7 bits (47), Expect = 2e-019
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 527 gagtgcctcaaggagtggaacggcgagcccctgccgctctgctgagc 573
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gagtgcctcaaggagtggaacggcgagcccctgccgctctgctgagc 56
>gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_E07_J13, mRNA sequence
Length = 418
Score = 91.7 bits (46), Expect = 1e-018
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 480 aggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaagg 539
||||| || ||| ||||| |||| |||||| ||||||||| |||| |||||||||||||
Sbjct: 24 aggtgttcctgggcatcagccagggcaagctcatcgaccccatgctggagtgcctcaagg 83
Query: 540 agtggaacggcgagcccctgcc 561
||||||||||||||||||||||
Sbjct: 84 agtggaacggcgagcccctgcc 105
>gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B10_C19, mRNA sequence
Length = 716
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 107 aaggacctgcagacggcgatc 127
|||||||||||||||| ||||
Sbjct: 340 aaggacctgcagacggagatc 320
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1910
Number of Sequences: 8143
Number of extensions: 1910
Number of successful extensions: 693
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 9
length of query: 844
length of database: 4,702,463
effective HSP length: 16
effective length of query: 828
effective length of database: 4,572,175
effective search space: 3785760900
effective search space used: 3785760900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)