BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816540.1|CN816540 HRO4521_H08_O15ZS5 Lib AA071E1X Aven... 60 2e-009
gb|CN815408.1|CN815408 HRO4509_C11_E21ZS5 Lib AA071E1X Aven... 48 7e-006
gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Aven... 48 7e-006
gb|CN819629.1|CN819629 HRO4402_D05_G10ZS5 Lib AA069E1X Aven... 48 7e-006
>gb|CN816540.1|CN816540 HRO4521_H08_O15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_H08_O15, mRNA sequence
Length = 771
Score = 60.0 bits (30), Expect = 2e-009
Identities = 173/221 (78%)
Strand = Plus / Minus
Query: 266 agggttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctg 325
|||||||||||| | |||| |||| ||||| ||||||| ||||| || |||||| |||
Sbjct: 517 agggttctcctggaaatccatcaatacctgtcgcatgataggatcggtaaggatgccctg 458
Query: 326 gatctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttc 385
||| || ||||| ||||| ||||| ||||| |||| | | ||||||| ||| | ||
Sbjct: 457 gatttctgggtcctgcatagctttactctgtttctcctgtaagtcctcctgacttatatc 398
Query: 386 gcctctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctg 445
|| ||| | |||||| | ||||| |||| ||||||||||| ||||||||| | || ||
Sbjct: 397 acccctgttagccttgttaatctgctcaatacacctccttataccatcaagcagttcttg 338
Query: 446 gtttttcgggncatgctttaggccagcttgataagtttcca 486
||| ||||| | ||||| | |||||||| ||||||||||
Sbjct: 337 gttattcggatcgtgcttcaacccagcttggtaagtttcca 297
>gb|CN815408.1|CN815408 HRO4509_C11_E21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C11_E21, mRNA sequence
Length = 894
Score = 48.1 bits (24), Expect = 7e-006
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 396 gccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcggg 455
|||||| | ||||| |||| ||||||||||| ||||||||| | || ||||| |||||
Sbjct: 543 gccttgttaatctgctcaatacacctccttataccatcaagcagttcttggttattcgga 484
Query: 456 ncatgctttaggccagcttgataagtttcca 486
| ||||| | |||||||| ||||||||||
Sbjct: 483 tcgtgcttcaacccagcttggtaagtttcca 453
>gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D07_G13, mRNA sequence
Length = 725
Score = 48.1 bits (24), Expect = 7e-006
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 396 gccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcggg 455
|||||| | ||||| |||| ||||||||||| ||||||||| | || ||||| |||||
Sbjct: 412 gccttgttaatctgctcaatacacctccttataccatcaagcagttcttggttattcgga 471
Query: 456 ncatgctttaggccagcttgataagtttcca 486
| ||||| | |||||||| ||||||||||
Sbjct: 472 tcgtgcttcaacccagcttggtaagtttcca 502
>gb|CN819629.1|CN819629 HRO4402_D05_G10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D05_G10, mRNA
sequence
Length = 766
Score = 48.1 bits (24), Expect = 7e-006
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 396 gccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcggg 455
|||||| | ||||| |||| ||||||||||| ||||||||| | || ||||| |||||
Sbjct: 379 gccttgttaatctgctcaatacacctccttataccatcaagcagttcttggttattcgga 320
Query: 456 ncatgctttaggccagcttgataagtttcca 486
| ||||| | |||||||| ||||||||||
Sbjct: 319 tcgtgcttcaacccagcttggtaagtttcca 289
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1086
Number of Sequences: 8143
Number of extensions: 1086
Number of successful extensions: 336
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 8
length of query: 487
length of database: 4,702,463
effective HSP length: 16
effective length of query: 471
effective length of database: 4,572,175
effective search space: 2153494425
effective search space used: 2153494425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)