BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3561840.2.1
         (1168 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY597512.1|  Avena sativa leafy hull sterile 1 (LHS1) mRN...   113   4e-025
gb|BE439336.1|BE439336  CDO1164_WHE05F11F ITEC CDO Oat cDNA ...    36   0.068
gb|CN816908.1|CN816908  HRO4526_B04_C08ZS5 Lib AA071E1X Aven...    36   0.068

>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
          Length = 904

 Score =  113 bits (57), Expect = 4e-025
 Identities = 114/133 (85%)
 Strand = Plus / Plus

                                                                       
Query: 134 atcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctcaag 193
           ||||||||||| |  ||||||||||| ||||||  ||||||||| || ||||| ||||||
Sbjct: 1   atcgagaacaagataagccggcaggtgaccttcgccaagcgccggaacgggctgctcaag 60

                                                                       
Query: 194 aaggcgtacgagctctccgtcctctgcgacgccgaggtggcgctcgtcgtcttctccagc 253
           |||||||||||||||||  | ||||||||||||||||  || ||| || |||||||| ||
Sbjct: 61  aaggcgtacgagctctcgctgctctgcgacgccgaggacgccctcatcatcttctccggc 120

                        
Query: 254 cgcggacgcctct 266
           ||||| |||||||
Sbjct: 121 cgcggccgcctct 133



>gb|BE439336.1|BE439336 CDO1164_WHE05F11F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO1164_WHE05, mRNA sequence
          Length = 275

 Score = 36.2 bits (18), Expect = 0.068
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 711 tggagatggataccaaat 728
           ||||||||||||||||||
Sbjct: 73  tggagatggataccaaat 90



>gb|CN816908.1|CN816908 HRO4526_B04_C08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4526_B04_C08, mRNA sequence
          Length = 808

 Score = 36.2 bits (18), Expect = 0.068
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 711 tggagatggataccaaat 728
           ||||||||||||||||||
Sbjct: 623 tggagatggataccaaat 606



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3097
Number of Sequences: 8143
Number of extensions: 3097
Number of successful extensions: 868
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 3
length of query: 1168
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1152
effective length of database: 4,572,175
effective search space: 5267145600
effective search space used: 5267145600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)