BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276201.2.1
(1827 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815836.1|CN815836 HRO4511_A05_B09ZS5 Lib AA071E1X Aven... 36 0.11
gb|CN816293.1|CN816293 HRO4519_B04_D07ZS5 Lib AA071E1X Aven... 36 0.11
gb|CN817899.1|CN817899 HRO4462_B12_D24ZS5 Lib AA070E1X Aven... 36 0.11
gb|CN818033.1|CN818033 HRO4472_E01_I02ZS5 Lib AA070E1X Aven... 36 0.11
gb|CN819444.1|CN819444 HRO4406_H01_O02ZS5 Lib AA069E1X Aven... 36 0.11
gb|CN819467.1|CN819467 HRO4406_C08_E16ZS5 Lib AA069E1X Aven... 36 0.11
gb|CN819582.1|CN819582 HRO4401_G12_M23ZS5 Lib AA069E1X Aven... 36 0.11
gb|CN819659.1|CN819659 HRO4402_F11_K22ZS5 Lib AA069E1X Aven... 36 0.11
gb|CN820297.1|CN820297 HRO4417_G07_M13ZS5 Lib AA069E1X Aven... 36 0.11
gb|CN816350.1|CN816350 HRO4519_G02_N03ZS5 Lib AA071E1X Aven... 34 0.42
gb|CN818918.1|CN818918 HRO4473_A07_XXXZS5 Lib AA070E1X Aven... 34 0.42
gb|CN821625.1|CN821625 HRO4408_D07_H14ZS5 Lib AA069E1X Aven... 34 0.42
>gb|CN815836.1|CN815836 HRO4511_A05_B09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_A05_B09, mRNA sequence
Length = 824
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1100 aagctgaagctgcccatg 1117
||||||||||||||||||
Sbjct: 57 aagctgaagctgcccatg 74
>gb|CN816293.1|CN816293 HRO4519_B04_D07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_B04_D07, mRNA sequence
Length = 745
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1100 aagctgaagctgcccatg 1117
||||||||||||||||||
Sbjct: 175 aagctgaagctgcccatg 192
>gb|CN817899.1|CN817899 HRO4462_B12_D24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_B12_D24, mRNA sequence
Length = 671
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1100 aagctgaagctgcccatg 1117
||||||||||||||||||
Sbjct: 114 aagctgaagctgcccatg 131
>gb|CN818033.1|CN818033 HRO4472_E01_I02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_E01_I02, mRNA sequence
Length = 658
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1100 aagctgaagctgcccatg 1117
||||||||||||||||||
Sbjct: 452 aagctgaagctgcccatg 469
>gb|CN819444.1|CN819444 HRO4406_H01_O02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_H01_O02, mRNA
sequence
Length = 628
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1100 aagctgaagctgcccatg 1117
||||||||||||||||||
Sbjct: 71 aagctgaagctgcccatg 88
>gb|CN819467.1|CN819467 HRO4406_C08_E16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_C08_E16, mRNA
sequence
Length = 501
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1691 tcattttttaagttatta 1708
||||||||||||||||||
Sbjct: 242 tcattttttaagttatta 225
>gb|CN819582.1|CN819582 HRO4401_G12_M23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_G12_M23, mRNA
sequence
Length = 359
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1691 tcattttttaagttatta 1708
||||||||||||||||||
Sbjct: 227 tcattttttaagttatta 210
>gb|CN819659.1|CN819659 HRO4402_F11_K22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_F11_K22, mRNA
sequence
Length = 741
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1100 aagctgaagctgcccatg 1117
||||||||||||||||||
Sbjct: 180 aagctgaagctgcccatg 197
>gb|CN820297.1|CN820297 HRO4417_G07_M13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_G07_M13, mRNA
sequence
Length = 660
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1100 aagctgaagctgcccatg 1117
||||||||||||||||||
Sbjct: 76 aagctgaagctgcccatg 93
>gb|CN816350.1|CN816350 HRO4519_G02_N03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_G02_N03, mRNA sequence
Length = 659
Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1556 ttttcattctggtgaataaat 1576
||||||||| |||||||||||
Sbjct: 523 ttttcattccggtgaataaat 543
>gb|CN818918.1|CN818918 HRO4473_A07_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_A07_XXX, mRNA sequence
Length = 809
Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1556 ttttcattctggtgaataaat 1576
||||||||| |||||||||||
Sbjct: 456 ttttcattccggtgaataaat 476
>gb|CN821625.1|CN821625 HRO4408_D07_H14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D07_H14, mRNA
sequence
Length = 522
Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1556 ttttcattctggtgaataaat 1576
||||||||| |||||||||||
Sbjct: 393 ttttcattccggtgaataaat 413
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3880
Number of Sequences: 8143
Number of extensions: 3880
Number of successful extensions: 1208
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 12
length of query: 1827
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1810
effective length of database: 4,564,032
effective search space: 8260897920
effective search space used: 8260897920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)