BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276111.2.1
(1393 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816784.1|CN816784 HRO4524_G03_N06ZS5 Lib AA071E1X Aven... 38 0.021
gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA ... 36 0.081
gb|CN815188.1|CN815188 HRO4506_H03_O06ZS5 Lib AA071E1X Aven... 34 0.32
gb|CN818639.1|CN818639 HRO4457_G03_N05ZS5 Lib AA070E1X Aven... 34 0.32
gb|CN820086.1|CN820086 HRO4410_H09_O18ZS5 Lib AA069E1X Aven... 34 0.32
emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA 34 0.32
>gb|CN816784.1|CN816784 HRO4524_G03_N06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_G03_N06, mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 0.021
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 958 aagaactcgtgggggcagagctggggcgagcgcgg 992
|||||||||||||| ||| |||||||||| ||||
Sbjct: 162 aagaactcgtggggcgagaactggggcgagagcgg 196
>gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO465_WHE2G0092, mRNA sequence
Length = 284
Score = 36.2 bits (18), Expect = 0.081
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 660 cgggctcaccaccgaggc 677
||||||||||||||||||
Sbjct: 172 cgggctcaccaccgaggc 155
>gb|CN815188.1|CN815188 HRO4506_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_H03_O06, mRNA sequence
Length = 398
Score = 34.2 bits (17), Expect = 0.32
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1034 gcggcatcgcgctcgacctcg 1054
||||||||||||||| |||||
Sbjct: 74 gcggcatcgcgctcgtcctcg 94
>gb|CN818639.1|CN818639 HRO4457_G03_N05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_G03_N05, mRNA sequence
Length = 427
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1222 atatatatacacacatg 1238
|||||||||||||||||
Sbjct: 314 atatatatacacacatg 298
>gb|CN820086.1|CN820086 HRO4410_H09_O18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_H09_O18, mRNA
sequence
Length = 619
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 41 gagggttcgcgctgatc 57
|||||||||||||||||
Sbjct: 10 gagggttcgcgctgatc 26
>emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA
Length = 1520
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 707 cgtgcagccgctccagg 723
|||||||||||||||||
Sbjct: 1148 cgtgcagccgctccagg 1132
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3904
Number of Sequences: 8143
Number of extensions: 3904
Number of successful extensions: 962
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 7
length of query: 1393
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1377
effective length of database: 4,572,175
effective search space: 6295884975
effective search space used: 6295884975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)