BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816950.1|CN816950 HRO4526_F04_K08ZS5 Lib AA071E1X Aven... 224 6e-059
gb|CN819822.1|CN819822 HRO4404_D12_H24ZS5 Lib AA069E1X Aven... 32 0.49
>gb|CN816950.1|CN816950 HRO4526_F04_K08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_F04_K08, mRNA sequence
Length = 701
Score = 224 bits (113), Expect = 6e-059
Identities = 206/237 (86%)
Strand = Plus / Plus
Query: 26 cattgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttca 85
||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 cattgatcgctcccattttcaggctctggttcatttctacgggtgcaagcttcaggttca 60
Query: 86 agaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccat 145
||||||||||| || |||||||||||||| |||||||| ||||| ||| ||| |||||
Sbjct: 61 ggaaaggatgacgagacagatagctgaagcagtttattccgtttcacaccgtggagccat 120
Query: 146 ggtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggag 205
|| ||||| ||||| |||||||| |||||||| ||||| |||||||||||||| |||||
Sbjct: 121 agttgttgtagaggcgaaccacatctgcatgatatcaagagggatagagaaaatcaggag 180
Query: 206 caacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| || ||||||||||||||||||||||| ||| || | || |||||||||||||
Sbjct: 181 tagtacagcaacaattgcagttttgggccattttctgactgattcttctgccaaggc 237
>gb|CN819822.1|CN819822 HRO4404_D12_H24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_D12_H24, mRNA
sequence
Length = 759
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 411 caaatttgtcacctgt 426
||||||||||||||||
Sbjct: 544 caaatttgtcacctgt 559
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1407
Number of Sequences: 8143
Number of extensions: 1407
Number of successful extensions: 366
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 4
length of query: 545
length of database: 4,702,463
effective HSP length: 16
effective length of query: 529
effective length of database: 4,572,175
effective search space: 2418680575
effective search space used: 2418680575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)