BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230358.2.1
(2136 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ629310.1| Avena strigosa partial s5.6 gene for recept... 381 e-105
emb|AJ629309.1| Avena strigosa partial s5.8 gene for recept... 268 2e-071
emb|AJ629311.1| Avena strigosa partial s5.11 gene for recep... 143 7e-034
gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Aven... 56 1e-007
gb|CN817214.1|CN817214 HRO4458_E06_J12ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817241.1|CN817241 HRO4464_E01_I02ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817299.1|CN817299 HRO4464_H03_O06ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817553.1|CN817553 HRO4463_H02_O03ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817562.1|CN817562 HRO4463_G04_M07ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817639.1|CN817639 HRO4463_B04_C07ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817657.1|CN817657 HRO4453_H05_P09ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817746.1|CN817746 HRO4461_D05_H09ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817804.1|CN817804 HRO4461_A05_B09ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817810.1|CN817810 HRO4462_H03_P06ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817820.1|CN817820 HRO4459_B06_C11ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN817848.1|CN817848 HRO4462_F07_L14ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818018.1|CN818018 HRO4472_F08_K16ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818152.1|CN818152 HRO4471_D04_G07ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818208.1|CN818208 HRO4470_H02_P04ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818340.1|CN818340 HRO4469_G09_N17ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818472.1|CN818472 HRO4460_C07_E14ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818604.1|CN818604 HRO4457_G08_N15ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818834.1|CN818834 HRO4460_B02_C04ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN818908.1|CN818908 HRO4473_B02_XXXZS5 Lib AA070E1X Aven... 34 0.49
gb|CN819000.1|CN819000 HRO4474_D07_H14ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN819020.1|CN819020 HRO4474_C04_F08ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN819195.1|CN819195 HRO4451_C04_E07ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN819295.1|CN819295 HRO4452_C11_E22ZS5 Lib AA070E1X Aven... 34 0.49
gb|CN820081.1|CN820081 HRO4410_H04_O08ZS5 Lib AA069E1X Aven... 34 0.49
>emb|AJ629310.1| Avena strigosa partial s5.6 gene for receptor-like-kinase
Length = 1410
Score = 381 bits (192), Expect = e-105
Identities = 303/340 (89%)
Strand = Plus / Plus
Query: 957 ctcgtaaacgtgatgccacactcccgttagccatgtatgggtagactaacaacctttcag 1016
|||||| ||||||||| |||||||| |||||||||||||| ||||||| |||| |||||
Sbjct: 352 ctcgtagacgtgatgcaacactcccattagccatgtatggatagactagtaaccgttcag 411
Query: 1017 taggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgctaatca 1076
|||| |||||||||||||||||||| || ||||||||| | ||||| |||||||||||||
Sbjct: 412 taggggtcatgcagaaaccacgaagccgaagaaggttcctatgcactgccatgctaatca 471
Query: 1077 tctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctcttttagtcttt 1136
||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 472 tctcaacttctgtttggaactaaagctcaccaccaggagtgcgctcctcttttagtcttt 531
Query: 1137 tcactgctaccaatgagccatcagcaagccttcctttgtacacttttccaaaaccgcctc 1196
||||||||||||||| ||||| |||||||| || ||||||||||| |||||||| ||||
Sbjct: 532 tcactgctaccaatgtaccatctgcaagcctccccttgtacactttaccaaaaccacctc 591
Query: 1197 ttcctaaaatgttcttgttactgaaattatcagttgcaacttgaagctcccgcaatgaaa 1256
|||||||||||||||| ||| | |||||||||| || ||||||||||| |||||||| |
Sbjct: 592 ttcctaaaatgttcttattattaaaattatcagacgcgacttgaagctctcgcaatgaga 651
Query: 1257 actttttgagctgaccaagatggacttctggatcctcctc 1296
|||| || |||||||||||||| |||||||| || |||||
Sbjct: 652 acttcttaagctgaccaagatgaacttctgggtcttcctc 691
Score = 232 bits (117), Expect = 1e-060
Identities = 159/173 (91%)
Strand = Plus / Plus
Query: 746 tgggtatccttgtagtccataagcttggcaagcccgaaatcacccacaactgcctcgaag 805
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 8 tgggtatccttgtaatccataagtttggcaagcccaaaatcacccacaactgcctcgaag 67
Query: 806 tcctcatccaaaagaatatttgcagctttgacatcccgatggatgattttgggatcgcag 865
||||| ||||||||||||||||| ||||||||||| || |||||||| ||||| || |||
Sbjct: 68 tcctcgtccaaaagaatatttgcggctttgacatcgcggtggatgatcttggggtcacag 127
Query: 866 tgatcatgcaagtaagaaagtcctcttgcagatcccagtgcaatccgtcttct 918
||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 128 tgatcgtgcaagtaagagagtccccttgcagatccaagtgcaatccgtcttct 180
Score = 174 bits (88), Expect = 2e-043
Identities = 115/124 (92%)
Strand = Plus / Plus
Query: 1299 caggaacatcgaagaaatgctcttcaggtttacgacggcgccacattgcaaatgcaattg 1358
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 800 caggcacatcaaagaaatgttcttcaggtttacgacggcgccacattgcaaatgcaatgg 859
Query: 1359 caggaacagcaaacaccaatgctgcaccagcagcaacacctccagctattgctccagtgc 1418
||||||||||||||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 860 caggaacagcaaacaccaaagcagcaccagcagcaacaccaccagcgatagctccagtgc 919
Query: 1419 taga 1422
||||
Sbjct: 920 taga 923
Score = 113 bits (57), Expect = 7e-025
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 1433 gattgagttgggggagatggaggattgaatggaggaggtggggaaaagggaggagcccca 1492
|||||| |||| || | |||||||||| ||||||||||||||||||| |||||| |||||
Sbjct: 1032 gattgacttggtggtgttggaggattgtatggaggaggtggggaaaaaggaggatcccca 1091
Query: 1493 gggcagggcttcgaagtaccagggccacaaagatttggattgttggcaaaact 1545
||||||||||| | ||||||||| ||||||||| |||||| || ||||||||
Sbjct: 1092 gggcagggctttgtagtaccaggaccacaaagaagtggattattcgcaaaact 1144
Score = 79.8 bits (40), Expect = 9e-015
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1544 cttataggggtgaagagtgaaaaggagccagtcgatgggacttgtcctgagaggttgttg 1603
||||||||||||||||||||||| |||||||||||||| ||| ||| || |||||||||
Sbjct: 1223 cttataggggtgaagagtgaaaaagagccagtcgatggaactgctcccgaaaggttgttg 1282
Query: 1604 ttcgagagatcc 1615
|| || ||||||
Sbjct: 1283 tttgacagatcc 1294
>emb|AJ629309.1| Avena strigosa partial s5.8 gene for receptor-like-kinase, exon 1
Length = 949
Score = 268 bits (135), Expect = 2e-071
Identities = 207/231 (89%)
Strand = Plus / Plus
Query: 1066 catgctaatcatctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctc 1125
|||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1 catgctgatcatctcaacttctgtttggaactgaagctcaccaccaggagtgcgctcctc 60
Query: 1126 ttttagtcttttcactgctaccaatgagccatcagcaagccttcctttgtacacttttcc 1185
|||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||
Sbjct: 61 ttttagtcttttcactgctaccaatgtaccatctgcaagcctccccttgtacactttacc 120
Query: 1186 aaaaccgcctcttcctaaaatgttcttgttactgaaattatcagttgcaacttgaagctc 1245
|||||| |||||||||||||||||||| ||| | |||||||||| || |||||||||||
Sbjct: 121 aaaaccacctcttcctaaaatgttcttattattaaaattatcagacgcgacttgaagctc 180
Query: 1246 ccgcaatgaaaactttttgagctgaccaagatggacttctggatcctcctc 1296
|||||||| ||||| || |||||||||||||| |||||||| || |||||
Sbjct: 181 tcgcaatgagaacttcttaagctgaccaagatgaacttctgggtcttcctc 231
Score = 174 bits (88), Expect = 2e-043
Identities = 115/124 (92%)
Strand = Plus / Plus
Query: 1299 caggaacatcgaagaaatgctcttcaggtttacgacggcgccacattgcaaatgcaattg 1358
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 caggcacatcaaagaaatgttcttcaggtttacgacggcgccacattgcaaatgcaatgg 399
Query: 1359 caggaacagcaaacaccaatgctgcaccagcagcaacacctccagctattgctccagtgc 1418
||||||||||||||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 400 caggaacagcaaacaccaaagcagcaccagcagcaacaccaccagcgatagctccagtgc 459
Query: 1419 taga 1422
||||
Sbjct: 460 taga 463
Score = 113 bits (57), Expect = 7e-025
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 1433 gattgagttgggggagatggaggattgaatggaggaggtggggaaaagggaggagcccca 1492
|||||| |||| || | |||||||||| ||||||||||||||||||| |||||| |||||
Sbjct: 572 gattgacttggtggtgttggaggattgtatggaggaggtggggaaaaaggaggatcccca 631
Query: 1493 gggcagggcttcgaagtaccagggccacaaagatttggattgttggcaaaact 1545
||||||||||| | ||||||||| ||||||||| |||||| || ||||||||
Sbjct: 632 gggcagggctttgtagtaccaggaccacaaagaagtggattattcgcaaaact 684
Score = 79.8 bits (40), Expect = 9e-015
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1544 cttataggggtgaagagtgaaaaggagccagtcgatgggacttgtcctgagaggttgttg 1603
||||||||||||||||||||||| |||||||||||||| ||| ||| || |||||||||
Sbjct: 763 cttataggggtgaagagtgaaaaagagccagtcgatggaactgctcccgaaaggttgttg 822
Query: 1604 ttcgagagatcc 1615
|| || ||||||
Sbjct: 823 tttgacagatcc 834
>emb|AJ629311.1| Avena strigosa partial s5.11 gene for receptor-like-kinase
Length = 968
Score = 143 bits (72), Expect = 7e-034
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 1299 caggaacatcgaagaaatgctcttcaggtttacgacggcgccacattgcaaatgcaattg 1358
|||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| ||||||
Sbjct: 299 cagggacatcaaagaaatgctcttcaggtttacgtcgccgccacaatgcaaatccaattg 358
Query: 1359 caggaacagcaaacaccaatgctgcaccagcagcaacacctccagctattgc 1410
||||||||||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct: 359 caggaacagcaaataccaatgcggcacccgcagcaacacctccagcaattgc 410
Score = 127 bits (64), Expect = 4e-029
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 1088 gtttggaactgaagctcaccaccaggtgtacgctcctcttttagtcttttcactgctacc 1147
|||||||| || || ||||||||||| ||||| || ||||||| |||||| |||||||||
Sbjct: 14 gtttggaattggagttcaccaccaggagtacgttcttcttttaatctttttactgctacc 73
Query: 1148 aatgagccatcagcaagccttcctttgtacacttttccaaaaccgcctcttcctaaaatg 1207
| || ||||| | || | || |||||||| ||||||||||| |||||||||| ||||
Sbjct: 74 agtgtaccatccgtcagtcgccccttgtacacctttccaaaaccacctcttcctagaatg 133
Query: 1208 ttcttgttactgaaattatcagttgcaacttgaagctcccgcaatgaaaactttttgagc 1267
||||| || ||||| |||||| | |||||||||||||||| | || ||| | || |||
Sbjct: 134 ttcttattgctgaagttatcactggcaacttgaagctccctaagcgagaacctcttcagc 193
Query: 1268 tgaccaagatggacttctggatcctcctcggc 1299
|||||||| || ||||| ||||||||||||||
Sbjct: 194 tgaccaaggtgcacttccggatcctcctcggc 225
Score = 58.0 bits (29), Expect = 3e-008
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1547 ataggggtgaagagtgaaaaggagccagtcgatgggacttgtcctgagaggttgttgttc 1606
|||||||| ||||||||||| |||||||| ||||| || ||| ||||| ||||||||
Sbjct: 748 ataggggtaaagagtgaaaatgagccagtagatggaaccgctccagagagattgttgttt 807
Query: 1607 gagagatcc 1615
|||||||||
Sbjct: 808 gagagatcc 816
>gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_C01_F02, mRNA sequence
Length = 537
Score = 56.0 bits (28), Expect = 1e-007
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 619 ctggccagtaataagctccagaagcatgatcccatagccaaaaacatc 666
||||||||| | |||||| |||||||||||||| || |||||||||||
Sbjct: 367 ctggccagtcacaagctcaagaagcatgatcccgtaaccaaaaacatc 320
Score = 38.2 bits (19), Expect = 0.032
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 823 atttgcagctttgacatcccgatggatgattttgggatcgcagtgatcatg 873
|||||||||||| ||||| || || ||||| ||||| | |||||| |||||
Sbjct: 163 atttgcagcttttacatcacggtgtatgatcttggggttgcagtgttcatg 113
>gb|CN817214.1|CN817214 HRO4458_E06_J12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_E06_J12, mRNA sequence
Length = 537
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 68 cccgtcaccttcgagca 84
>gb|CN817241.1|CN817241 HRO4464_E01_I02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_E01_I02, mRNA sequence
Length = 596
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 132 cccgtcaccttcgagca 148
>gb|CN817299.1|CN817299 HRO4464_H03_O06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H03_O06, mRNA sequence
Length = 638
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 176 cccgtcaccttcgagca 192
>gb|CN817553.1|CN817553 HRO4463_H02_O03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_H02_O03, mRNA sequence
Length = 520
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 32 cccgtcaccttcgagca 48
>gb|CN817562.1|CN817562 HRO4463_G04_M07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_G04_M07, mRNA sequence
Length = 567
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 78 cccgtcaccttcgagca 94
>gb|CN817639.1|CN817639 HRO4463_B04_C07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_B04_C07, mRNA sequence
Length = 522
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 53 cccgtcaccttcgagca 69
>gb|CN817657.1|CN817657 HRO4453_H05_P09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_H05_P09, mRNA sequence
Length = 594
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 130 cccgtcaccttcgagca 146
>gb|CN817746.1|CN817746 HRO4461_D05_H09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_D05_H09, mRNA sequence
Length = 501
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 51 cccgtcaccttcgagca 67
>gb|CN817804.1|CN817804 HRO4461_A05_B09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_A05_B09, mRNA sequence
Length = 485
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 35 cccgtcaccttcgagca 51
>gb|CN817810.1|CN817810 HRO4462_H03_P06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_H03_P06, mRNA sequence
Length = 829
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 399 cccgtcaccttcgagca 415
>gb|CN817820.1|CN817820 HRO4459_B06_C11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_B06_C11, mRNA sequence
Length = 532
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 64 cccgtcaccttcgagca 80
>gb|CN817848.1|CN817848 HRO4462_F07_L14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_F07_L14, mRNA sequence
Length = 597
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 134 cccgtcaccttcgagca 150
>gb|CN818018.1|CN818018 HRO4472_F08_K16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_F08_K16, mRNA sequence
Length = 738
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 270 cccgtcaccttcgagca 286
>gb|CN818152.1|CN818152 HRO4471_D04_G07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_D04_G07, mRNA sequence
Length = 617
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 163 cccgtcaccttcgagca 179
>gb|CN818208.1|CN818208 HRO4470_H02_P04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_H02_P04, mRNA sequence
Length = 480
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 17 cccgtcaccttcgagca 33
>gb|CN818340.1|CN818340 HRO4469_G09_N17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_G09_N17, mRNA sequence
Length = 464
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 14 cccgtcaccttcgagca 30
>gb|CN818472.1|CN818472 HRO4460_C07_E14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_C07_E14, mRNA sequence
Length = 659
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 209 cccgtcaccttcgagca 225
>gb|CN818604.1|CN818604 HRO4457_G08_N15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_G08_N15, mRNA sequence
Length = 614
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 144 cccgtcaccttcgagca 160
>gb|CN818834.1|CN818834 HRO4460_B02_C04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_B02_C04, mRNA sequence
Length = 529
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 80 cccgtcaccttcgagca 96
>gb|CN818908.1|CN818908 HRO4473_B02_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_B02_XXX, mRNA sequence
Length = 652
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 197 cccgtcaccttcgagca 213
>gb|CN819000.1|CN819000 HRO4474_D07_H14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_D07_H14, mRNA sequence
Length = 798
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1011 tttcagtaggtgtcatg 1027
|||||||||||||||||
Sbjct: 417 tttcagtaggtgtcatg 433
>gb|CN819020.1|CN819020 HRO4474_C04_F08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_C04_F08, mRNA sequence
Length = 668
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 200 cccgtcaccttcgagca 216
>gb|CN819195.1|CN819195 HRO4451_C04_E07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_C04_E07, mRNA sequence
Length = 491
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 22 cccgtcaccttcgagca 38
>gb|CN819295.1|CN819295 HRO4452_C11_E22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_C11_E22, mRNA sequence
Length = 524
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 68 cccgtcaccttcgagca 84
>gb|CN820081.1|CN820081 HRO4410_H04_O08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_H04_O08, mRNA
sequence
Length = 600
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 385 cccgtcaccttcgagca 401
|||||||||||||||||
Sbjct: 102 cccgtcaccttcgagca 118
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5523
Number of Sequences: 8143
Number of extensions: 5523
Number of successful extensions: 1589
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 64
length of query: 2136
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2119
effective length of database: 4,564,032
effective search space: 9671183808
effective search space used: 9671183808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)