BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819306.1|CN819306 HRO4452_D11_G22ZS5 Lib AA070E1X Aven... 42 5e-004
gb|CN820426.1|CN820426 HRO4419_C02_F03ZS5 Lib AA069E1X Aven... 40 0.002
>gb|CN819306.1|CN819306 HRO4452_D11_G22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_D11_G22, mRNA sequence
Length = 353
Score = 42.1 bits (21), Expect = 5e-004
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 305 tgcaacgcacgggcactcagctagt 329
||||||||||||||| |||||||||
Sbjct: 188 tgcaacgcacgggcagtcagctagt 164
>gb|CN820426.1|CN820426 HRO4419_C02_F03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_C02_F03, mRNA
sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcact 321
||||||||||||||||||||
Sbjct: 428 cgttgcaacgcacgggcact 447
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1167
Number of Sequences: 8143
Number of extensions: 1167
Number of successful extensions: 316
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 2
length of query: 589
length of database: 4,702,463
effective HSP length: 16
effective length of query: 573
effective length of database: 4,572,175
effective search space: 2619856275
effective search space used: 2619856275
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)