BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.3
(792 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Aven... 309 2e-084
gb|CN816242.1|CN816242 HRO4518_E06_I12ZS5 Lib AA071E1X Aven... 88 1e-017
gb|CN820436.1|CN820436 HRO4419_D01_H01ZS5 Lib AA069E1X Aven... 34 0.18
gb|CN821175.1|CN821175 HRO4428_C12_F24ZS5 Lib AA069E1X Aven... 34 0.18
>gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C05_F10, mRNA sequence
Length = 851
Score = 309 bits (156), Expect = 2e-084
Identities = 405/488 (82%)
Strand = Plus / Plus
Query: 305 gatcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgg 364
||||||||| || | ||||||||| ||||||| | ||||| || | ||||| |||||
Sbjct: 28 gatcaatggctctagccctgatgattatgagaggctggagaagggattgatgcagtatgg 87
Query: 365 gtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttga 424
|||| ||||||| ||||||| ||||||||| |||| || |||||||| || ||||||||
Sbjct: 88 gtgtgcacattaccgaaggaggtgccgcatacgagcaccatgctgcaacgagatttttga 147
Query: 425 ttgccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggca 484
||| || ||||||||||||||| | |||||||| ||||||| |||| || | | ||||
Sbjct: 148 ttgtcggcactgccacaatgaatcaaagaattcgattaaaactgatgtgattaggcggca 207
Query: 485 tgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacagga 544
||||||| |||| ||||||||||||||||| |||||||||| ||||| |||||||| ||
Sbjct: 208 tgaactttcacgtcatgaagtgcagcaggtcatatgctcattatgtggtactgaacaaga 267
Query: 545 ggtgcgacaagtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtg 604
||| | || |||| |||| || ||||| || ||||| || || ||||||| ||||
Sbjct: 268 ggtagggaaaatatgcatcagctgtggtgtatgtatgggaaagtatttctgtgaagtgtg 327
Query: 605 caaactcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatg 664
||||||||| || |||||| |||| ||||||||||||||||| | || |||||||||||
Sbjct: 328 caaactctttgatgatgatatctcaaaacagcagtatcactgtcatggttgtggaatatg 387
Query: 665 tagaatcggagggagggagaatttcttccactgttcaaaatgtggatgttgctattcaat 724
|||||| || || | ||||||||||| ||||| ||||||||||||||||| ||||| |
Sbjct: 388 tagaattggtggcggcgagaatttctttcactgctcaaaatgtggatgttgttattctac 447
Query: 725 tgcgctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctg 784
| | ||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 448 agtgttgaagaacagccatgcatgtgttgaaggagcaatgcatcatgactgtccaatctg 507
Query: 785 cttcgagt 792
||||||||
Sbjct: 508 cttcgagt 515
>gb|CN816242.1|CN816242 HRO4518_E06_I12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_E06_I12, mRNA sequence
Length = 723
Score = 87.7 bits (44), Expect = 1e-017
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 741 catgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 21 catgcatgtgttgaaggagcaatgcatcatgactgtccaatctgcttcgagt 72
>gb|CN820436.1|CN820436 HRO4419_D01_H01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_D01_H01, mRNA
sequence
Length = 299
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 578 catggggaaatacttct 594
|||||||||||||||||
Sbjct: 157 catggggaaatacttct 141
>gb|CN821175.1|CN821175 HRO4428_C12_F24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_C12_F24, mRNA
sequence
Length = 541
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 578 catggggaaatacttct 594
|||||||||||||||||
Sbjct: 302 catggggaaatacttct 286
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1918
Number of Sequences: 8143
Number of extensions: 1918
Number of successful extensions: 541
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 4
length of query: 792
length of database: 4,702,463
effective HSP length: 16
effective length of query: 776
effective length of database: 4,572,175
effective search space: 3548007800
effective search space used: 3548007800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)