BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815081.1|CN815081 HRO4505_F08_K15ZS5 Lib AA071E1X Aven... 36 0.074
gb|CN816823.1|CN816823 HRO4525_C01_E01ZS5 Lib AA071E1X Aven... 36 0.074
gb|CN821219.1|CN821219 HRO4428_H01_P02ZS5 Lib AA069E1X Aven... 34 0.29
>gb|CN815081.1|CN815081 HRO4505_F08_K15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_F08_K15, mRNA sequence
Length = 494
Score = 36.2 bits (18), Expect = 0.074
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1227 atagaatacatattttttatga 1248
|||||| |||||||||||||||
Sbjct: 456 atagaaaacatattttttatga 477
>gb|CN816823.1|CN816823 HRO4525_C01_E01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_C01_E01, mRNA sequence
Length = 619
Score = 36.2 bits (18), Expect = 0.074
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1004 gtgtcatcctccttctcc 1021
||||||||||||||||||
Sbjct: 573 gtgtcatcctccttctcc 556
>gb|CN821219.1|CN821219 HRO4428_H01_P02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H01_P02, mRNA
sequence
Length = 576
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 493 agaagctgcgcaaggcg 509
|||||||||||||||||
Sbjct: 76 agaagctgcgcaaggcg 92
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3376
Number of Sequences: 8143
Number of extensions: 3376
Number of successful extensions: 982
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 3
length of query: 1277
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1261
effective length of database: 4,572,175
effective search space: 5765512675
effective search space used: 5765512675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)