BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3185308.2.1
         (1019 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818773.1|CN818773  HRO4468_D07_G14ZS5 Lib AA070E1X Aven...    36   0.059
gb|CN820772.1|CN820772  HRO4414_F03_K06ZS5 Lib AA069E1X Aven...    36   0.059
gb|CN821389.1|CN821389  HRO4424_G05_N10ZS5 Lib AA069E1X Aven...    36   0.059
>gb|CN818773.1|CN818773 HRO4468_D07_G14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4468_D07_G14, mRNA sequence
          Length = 842

 Score = 36.2 bits (18), Expect = 0.059
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 459 atcgccgaggagaaggcc 476
           ||||||||||||||||||
Sbjct: 128 atcgccgaggagaaggcc 145
>gb|CN820772.1|CN820772 HRO4414_F03_K06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_F03_K06, mRNA
           sequence
          Length = 757

 Score = 36.2 bits (18), Expect = 0.059
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 462 gccgaggagaaggccggc 479
           ||||||||||||||||||
Sbjct: 28  gccgaggagaaggccggc 45
>gb|CN821389.1|CN821389 HRO4424_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4424_G05_N10, mRNA
           sequence
          Length = 761

 Score = 36.2 bits (18), Expect = 0.059
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 459 atcgccgaggagaaggcc 476
           ||||||||||||||||||
Sbjct: 32  atcgccgaggagaaggcc 49
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2408
Number of Sequences: 8143
Number of extensions: 2408
Number of successful extensions: 971
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 3
length of query: 1019
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1003
effective length of database: 4,572,175
effective search space: 4585891525
effective search space used: 4585891525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)