BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815795.1|CN815795 HRO4510_E12_I24ZS5 Lib AA071E1X Aven... 36 0.068
gb|CN817469.1|CN817469 HRO4466_B04_D08ZS5 Lib AA070E1X Aven... 34 0.27
gb|CN818529.1|CN818529 HRO4466_F05_L10ZS5 Lib AA070E1X Aven... 34 0.27
>gb|CN815795.1|CN815795 HRO4510_E12_I24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_E12_I24, mRNA sequence
Length = 481
Score = 36.2 bits (18), Expect = 0.068
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 504 tgtcaacaacgactacac 521
||||||||||||||||||
Sbjct: 377 tgtcaacaacgactacac 360
>gb|CN817469.1|CN817469 HRO4466_B04_D08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_B04_D08, mRNA sequence
Length = 500
Score = 34.2 bits (17), Expect = 0.27
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1038 cagaggaagtagggattgatt 1058
||||| |||||||||||||||
Sbjct: 405 cagagaaagtagggattgatt 385
>gb|CN818529.1|CN818529 HRO4466_F05_L10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_F05_L10, mRNA sequence
Length = 884
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 423 gcagatcaccgtcgcct 439
|||||||||||||||||
Sbjct: 24 gcagatcaccgtcgcct 8
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2679
Number of Sequences: 8143
Number of extensions: 2679
Number of successful extensions: 810
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 4
length of query: 1172
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1156
effective length of database: 4,572,175
effective search space: 5285434300
effective search space used: 5285434300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)