BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115147.2.2
         (1310 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815496.1|CN815496  HRO4512_C09_F18ZS5 Lib AA071E1X Aven...    34   0.30 
gb|AM071401.1|AM071401  AM071401 Avena sativa leaf 3 weeks o...    34   0.30 

>gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4512_C09_F18, mRNA sequence
          Length = 377

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 594 ggcggtggcggtgcggc 610
           |||||||||||||||||
Sbjct: 180 ggcggtggcggtgcggc 196



>gb|AM071401.1|AM071401 AM071401 Avena sativa leaf 3 weeks old, post-germination Avena
           sativa cDNA clone ASCID1-1_003_a06, mRNA sequence
          Length = 870

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 221 aggcggagaagaagaag 237
           |||||||||||||||||
Sbjct: 194 aggcggagaagaagaag 210



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3480
Number of Sequences: 8143
Number of extensions: 3480
Number of successful extensions: 1173
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 3
length of query: 1310
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1294
effective length of database: 4,572,175
effective search space: 5916394450
effective search space used: 5916394450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)