BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106166.2.1
(715 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA L... 38 0.010
gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Li... 36 0.041
gb|CN816940.1|CN816940 HRO4526_E02_I04ZS5 Lib AA071E1X Aven... 34 0.16
>gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO506_WHE04G12, mRNA sequence
Length = 167
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgca 709
|||||||||||||||||||
Sbjct: 19 ctcgtgccgaattcctgca 1
>gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO58_WHE04, mRNA sequence
Length = 220
Score = 36.2 bits (18), Expect = 0.041
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgc 708
||||||||||||||||||
Sbjct: 18 ctcgtgccgaattcctgc 1
>gb|CN816940.1|CN816940 HRO4526_E02_I04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E02_I04, mRNA sequence
Length = 625
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 153 atgtatacatgtcccac 169
|||||||||||||||||
Sbjct: 558 atgtatacatgtcccac 574
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2802
Number of Sequences: 8143
Number of extensions: 2802
Number of successful extensions: 1140
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 4
length of query: 715
length of database: 4,702,463
effective HSP length: 16
effective length of query: 699
effective length of database: 4,572,175
effective search space: 3195950325
effective search space used: 3195950325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)