BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106156.2.1
(1016 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814897.1|CN814897 HRO4503_F11_L20ZS5 Lib AA071E1X Aven... 208 7e-054
gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Aven... 64 3e-010
gb|CN819640.1|CN819640 HRO4402_E04_I08ZS5 Lib AA069E1X Aven... 34 0.23
>gb|CN814897.1|CN814897 HRO4503_F11_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_F11_L20, mRNA sequence
Length = 610
Score = 208 bits (105), Expect = 7e-054
Identities = 192/221 (86%)
Strand = Plus / Minus
Query: 262 ggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcgact 321
||||||||||||| || ||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 305 ggctatatttagtctgtcccgtagccccgtggatgcgacttctgccatctccacgcgacg 246
Query: 322 gataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatcttt 381
|| |||||||| ||||||||||||| ||||| |||||||||||||| |||| ||||||
Sbjct: 245 gacaggctctccttgagatcggtatgttgagcagtccagttgagctcactgttgatcttt 186
Query: 382 gttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaattttg 441
|| ||||| ||| ||||||| ||||| ||||||||||| ||| |||||||||||| ||||
Sbjct: 185 gtagggtcactgaatacttcagcatagtctcctggcctcctgctgaggtactcaactttg 126
Query: 442 atgttgaccccagttgccttcttgcaggcatcaacaaactc 482
|||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 125 atgtcaaccccggttgcctttttgcaggcatccacaaactc 85
>gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C04_F07, mRNA
sequence
Length = 741
Score = 63.9 bits (32), Expect = 3e-010
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggattgata 894
||||| ||||||| ||||| ||||||| ||| || || ||||| |||||||||||||||
Sbjct: 116 tttgaaaaatctagaatgatgtcctctgacatcttttttgctttcccatatggattgata 57
Query: 895 gggaactaaggtgtggcttctgtaataggcat 926
|| | || |||||| | |||||| ||||||||
Sbjct: 56 ggaacctgaggtgttgtttctgtgataggcat 25
Score = 56.0 bits (28), Expect = 6e-008
Identities = 202/260 (77%)
Strand = Plus / Minus
Query: 508 ccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagca 567
||||||||||| || || ||||| |||||||| || || || ||||| |||||||||
Sbjct: 410 ccaacattgtagattccaactttgctaggctcagctttaccaagagctttgacatgagca 351
Query: 568 tcaactaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataa 627
|| || | |||||||||||| || || || || || || ||||||||||| || || ||
Sbjct: 350 tcgacgagatctgtgacatctatgtagtccctaatacaagttccatcagcagtagggtag 291
Query: 628 tctgttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagcccca 687
|| |||||| |||||| | ||||||||| |||| | |||||||| || ||||| |||
Sbjct: 290 tccgttcctcgaaccttcagccctggaatggttcctgacgctgcatcgaaacaagcacca 231
Query: 688 gatatccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcaggg 747
|| |||| || ||||| || | |||||||| ||||| || || | |||||| |||
Sbjct: 230 gaaatccttccgtgctcgcgcaactctggccttggagcttccccgaggagtccctccggg 171
Query: 748 tcagatccaataacattgaa 767
|| |||||||| ||||||||
Sbjct: 170 tctgatccaatcacattgaa 151
Score = 40.1 bits (20), Expect = 0.004
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 797 accttaaaatcatgacagccatgt 820
||||||| ||||||||||||||||
Sbjct: 148 accttaagatcatgacagccatgt 125
>gb|CN819640.1|CN819640 HRO4402_E04_I08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_E04_I08, mRNA
sequence
Length = 574
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 138 aaataaaaaggacgaga 154
|||||||||||||||||
Sbjct: 375 aaataaaaaggacgaga 359
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2585
Number of Sequences: 8143
Number of extensions: 2585
Number of successful extensions: 752
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 6
length of query: 1016
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1000
effective length of database: 4,572,175
effective search space: 4572175000
effective search space used: 4572175000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)