BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3099514.2.1
(547 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Aven... 62 5e-010
>gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_G04_M07, mRNA sequence
Length = 630
Score = 61.9 bits (31), Expect = 5e-010
Identities = 100/123 (81%)
Strand = Plus / Plus
Query: 59 gagaagtacacatggaagatatactcagagaggttgatgatactggccggggtctacggt 118
||||||||||| |||||| | ||||| |||||| |||||| ||| |||| || || ||
Sbjct: 159 gagaagtacacctggaagctgtactcggagaggctgatgaccctgaccggtgtatatgga 218
Query: 119 ttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttc 178
|||||||| |||||| || || |||||||| ||||| | |||||||| |||||||||
Sbjct: 219 ttctggaaatacgtgagtaacctggagaggcgtgagactcgccgctacctggagatgttc 278
Query: 179 tac 181
|||
Sbjct: 279 tac 281
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1276
Number of Sequences: 8143
Number of extensions: 1276
Number of successful extensions: 304
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 1
length of query: 547
length of database: 4,702,463
effective HSP length: 16
effective length of query: 531
effective length of database: 4,572,175
effective search space: 2427824925
effective search space used: 2427824925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)