BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3089980.2.1
(540 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA231848.1|AA231848 CDO87.R cDNA from oat Avena sativa c... 36 0.031
gb|CN815562.1|CN815562 HRO4513_A08_A15ZS5 Lib AA071E1X Aven... 34 0.12
gb|CN816241.1|CN816241 HRO4518_E05_I10ZS5 Lib AA071E1X Aven... 34 0.12
gb|CN818411.1|CN818411 HRO4469_C04_F07ZS5 Lib AA070E1X Aven... 34 0.12
gb|CN819640.1|CN819640 HRO4402_E04_I08ZS5 Lib AA069E1X Aven... 34 0.12
gb|CN814887.1|CN814887 HRO4503_E11_J21ZS5 Lib AA071E1X Aven... 32 0.48
>gb|AA231848.1|AA231848 CDO87.R cDNA from oat Avena sativa cDNA clone CDO87, mRNA sequence
Length = 268
Score = 36.2 bits (18), Expect = 0.031
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 234 gtcgcagacgccggcgacgacg 255
|||||||||| |||||||||||
Sbjct: 55 gtcgcagacgacggcgacgacg 34
>gb|CN815562.1|CN815562 HRO4513_A08_A15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_A08_A15, mRNA sequence
Length = 609
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 200 cctcgacgccgccggcc 216
|||||||||||||||||
Sbjct: 12 cctcgacgccgccggcc 28
>gb|CN816241.1|CN816241 HRO4518_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_E05_I10, mRNA sequence
Length = 847
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 384 caggtgggcgagcgagc 400
|||||||||||||||||
Sbjct: 653 caggtgggcgagcgagc 637
>gb|CN818411.1|CN818411 HRO4469_C04_F07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_C04_F07, mRNA sequence
Length = 461
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 68 ataatacagtagtacgt 84
|||||||||||||||||
Sbjct: 333 ataatacagtagtacgt 349
>gb|CN819640.1|CN819640 HRO4402_E04_I08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_E04_I08, mRNA
sequence
Length = 574
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 312 gttgacgagctcctcgt 328
|||||||||||||||||
Sbjct: 207 gttgacgagctcctcgt 191
>gb|CN814887.1|CN814887 HRO4503_E11_J21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E11_J21, mRNA sequence
Length = 736
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 241 acgccggcgacgacgg 256
||||||||||||||||
Sbjct: 167 acgccggcgacgacgg 182
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 959
Number of Sequences: 8143
Number of extensions: 959
Number of successful extensions: 307
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 6
length of query: 540
length of database: 4,702,463
effective HSP length: 16
effective length of query: 524
effective length of database: 4,572,175
effective search space: 2395819700
effective search space used: 2395819700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)