BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820067.1|CN820067 HRO4410_G02_M04ZS5 Lib AA069E1X Aven... 238 5e-063
>gb|CN820067.1|CN820067 HRO4410_G02_M04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G02_M04, mRNA
sequence
Length = 689
Score = 238 bits (120), Expect = 5e-063
Identities = 315/380 (82%)
Strand = Plus / Minus
Query: 225 tgttcacttttccaagaattcttggcagcttctgcagatgaaccactagaatctccacct 284
|||||| ||||||||||||||||||| ||| | |||||||| |||||||||| | |||
Sbjct: 425 tgttcaattttccaagaattcttggctgctccaacagatgaattactagaatctgcccct 366
Query: 285 ttatctttaggcttcgagaagaatggatcccatttgtgaggtccaattgcctgctgtcca 344
|| || || ||||| ||||||||||||||||||| || ||||| |||| |||||||
Sbjct: 365 ttgtccttgggcttagagaagaatggatcccattcatgcggtccgattgttcgctgtcct 306
Query: 345 tcgtctaacagactatacttccagctattctcttcgataaaatctttgtcttcttggcct 404
|| ||||||||| ||||||||||||||||||||| || |||||||| ||||| | |
Sbjct: 305 tcttctaacagagcatacttccagctattctcttcaatgaaatctttatcttcgctgttt 246
Query: 405 gcgatgatatctcttctcaactttgtcactttgttaatgatcgcctctatggaaacatca 464
| || |||||||||||||| || |||||| ||||||||||| ||| | | |||||||||
Sbjct: 245 gagacgatatctcttctcatctgtgtcaccttgttaatgattgcccccaccgaaacatca 186
Query: 465 aatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcacctttggtatc 524
|| ||||| |||| || ||||| ||||| |||||||| |||||||||||| |||||||
Sbjct: 185 aacgcatccttcagggtttccagcttcgaccttggatcagcatatatcacccttggtatg 126
Query: 525 agattgatgacctcctctctcatttgcttgaccacatctgggtgaatactctttagcctc 584
|||||||| ||||| || ||||| |||||||| |||||||| || ||||| |||| ||
Sbjct: 125 agattgataacctcttccctcatctgcttgacgacatctggatggatacttcttagtatc 66
Query: 585 tcctcaatgctggcatttcc 604
||||||||||| |||||||
Sbjct: 65 ccctcaatgctgacatttcc 46
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1816
Number of Sequences: 8143
Number of extensions: 1816
Number of successful extensions: 478
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 4
length of query: 605
length of database: 4,702,463
effective HSP length: 16
effective length of query: 589
effective length of database: 4,572,175
effective search space: 2693011075
effective search space used: 2693011075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)