BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816530.1|CN816530 HRO4521_G10_M19ZS5 Lib AA071E1X Aven... 178 1e-044
gb|CN821534.1|CN821534 HRO4426_D07_G14ZS5 Lib AA069E1X Aven... 34 0.42
>gb|CN816530.1|CN816530 HRO4521_G10_M19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G10_M19, mRNA sequence
Length = 749
Score = 178 bits (90), Expect = 1e-044
Identities = 273/334 (81%)
Strand = Plus / Minus
Query: 847 atttggcaactctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgc 906
||||||||||||||| |||||||| ||| |||| ||||||| |||||||| || || ||
Sbjct: 732 atttggcaactctattccccagcgtataaacaagtaccttattgcctgagagcgagacgc 673
Query: 907 atgcattggaattacagatagcctggtggcgccatggttatacagagcatgacaacgcag 966
|| || | | ||||||| || ||||| || | |||||||| || |||| |||||| ||
Sbjct: 672 gtgaatagtagttacagacagtctggtagcactgtggttataaagcgcattacaacggag 613
Query: 967 tgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttggattaac 1026
|||||||| ||||||||||| || || || | |||||| | |||||||||||| |
Sbjct: 612 cgactggatcctcatcaacttcctcaagtcttttagaggaggtagatgatttggattgtc 553
Query: 1027 cactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatgacttgctt 1086
|||| |||||||| | ||||| | ||||| ||||| ||||||||||| || | |||| |
Sbjct: 552 cactttaaatgcatgtcaataggcagaagaatgttcagaatcttcaaatatcatttgcct 493
Query: 1087 ttcagttctcccccttctttctactactgaagaagcccacttaactaagtacttccttaa 1146
|||| |||| ||| |||||||||| ||||||| |||||| || |||| ||||| ||||
Sbjct: 492 ttcaattcttccctttctttctaccactgaagtagcccatttcactagatactttcttag 433
Query: 1147 accttctcctccccaacgatactcaatatgtgat 1180
||||||||||||||||||||||||||||||||||
Sbjct: 432 accttctcctccccaacgatactcaatatgtgat 399
Score = 38.2 bits (19), Expect = 0.027
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1543 tatccttgacaagtaattcttgc 1565
|||||||||||||| ||||||||
Sbjct: 33 tatccttgacaagtgattcttgc 11
Score = 36.2 bits (18), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1429 atcttcctttttaacagagtctacag 1454
||||||||| ||||||||||| ||||
Sbjct: 150 atcttccttgttaacagagtccacag 125
>gb|CN821534.1|CN821534 HRO4426_D07_G14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D07_G14, mRNA
sequence
Length = 512
Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 346 tcaacatttgaacaaatttgt 366
|||| ||||||||||||||||
Sbjct: 376 tcaaaatttgaacaaatttgt 356
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5404
Number of Sequences: 8143
Number of extensions: 5404
Number of successful extensions: 1463
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 9
length of query: 1829
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1812
effective length of database: 4,564,032
effective search space: 8270025984
effective search space used: 8270025984
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)