BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3067267.2.1
         (893 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AX180458.1|  Sequence 36 from Patent WO0146391                 34   0.20 

>emb|AX180458.1| Sequence 36 from Patent WO0146391
          Length = 7340

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 734  aaagttcaaccaagatt 750
            |||||||||||||||||
Sbjct: 1100 aaagttcaaccaagatt 1084



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2603
Number of Sequences: 8143
Number of extensions: 2603
Number of successful extensions: 618
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 3
length of query: 893
length of database: 4,702,463
effective HSP length: 16
effective length of query: 877
effective length of database: 4,572,175
effective search space: 4009797475
effective search space used: 4009797475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)