BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815040.1|CN815040 HRO4505_B12_C23ZS5 Lib AA071E1X Aven... 256 2e-068
>gb|CN815040.1|CN815040 HRO4505_B12_C23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B12_C23, mRNA sequence
Length = 774
Score = 256 bits (129), Expect = 2e-068
Identities = 321/385 (83%)
Strand = Plus / Plus
Query: 1 cagttgtcaatgatccaaatttgaaatggtacgaaagttcttgggaactgttgggtaacg 60
||||||||| |||||||||| |||||||||| |||||||| || | | | || ||||| |
Sbjct: 57 cagttgtcagtgatccaaatatgaaatggtatgaaagttcatgtggattattaggtaatg 116
Query: 61 agtacttcatgcatgcatctggttcactatatgctctttcttctgaggtggttgaagctc 120
||||||||| ||| |||||||| |||| |||||||||||||| || ||||| | | |||
Sbjct: 117 agtacttcacgcacgcatctggcgcactgtatgctctttcttcggaagtggtgggaactc 176
Query: 121 tagctactgcaaagagtgatagcttaaggatgtttgattatgaagatgttacaatcggcg 180
||||||||||||||| |||||| ||||||||||| ||| | || |||||||| || |||
Sbjct: 177 tagctactgcaaagaatgatagtttaaggatgttcgatcacgaggatgttaccattggct 236
Query: 181 catggatgcttgctatgaatgtaaagcatgaagacaaccgagcaatgtgtgattcagtat 240
|||||||||| || ||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 237 catggatgctcgccatgaatgtaaatcatgaagacaaccgtgcaatgtgtgattccacat 296
Query: 241 gtacccctacctccatcgctgtatgggacagtaagaaatgctcaggtacttgtaacgtcg 300
| || || |||||||| |||||||||||||| ||| ||| |||||| | |||||| |
Sbjct: 297 gcactcccacctccattgctgtatgggacagcaagccatgttcaggttcctgtaacccca 356
Query: 301 ctgacaaaataaagcagctccataacaccactgtgtgctcaaagagcccaacgttgccac 360
||| ||||||||| ||| || || || ||| ||||||| || |||||||| || ||||
Sbjct: 357 ttgagaaaataaaggggctgcacaatacaactttgtgctcgaaaagcccaacattaccac 416
Query: 361 ctgaggtggaggaggaagaatagaa 385
|||| |||||||||||||| |||||
Sbjct: 417 ctgatgtggaggaggaagagtagaa 441
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2278
Number of Sequences: 8143
Number of extensions: 2278
Number of successful extensions: 864
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 1
length of query: 725
length of database: 4,702,463
effective HSP length: 16
effective length of query: 709
effective length of database: 4,572,175
effective search space: 3241672075
effective search space used: 3241672075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)