BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821434.1|CN821434 HRO4425_C07_E13ZS5 Lib AA069E1X Aven... 149 7e-036
gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Aven... 50 5e-006
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 46 7e-005
gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Aven... 34 0.27
>gb|CN821434.1|CN821434 HRO4425_C07_E13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C07_E13, mRNA
sequence
Length = 435
Score = 149 bits (75), Expect = 7e-036
Identities = 337/423 (79%), Gaps = 1/423 (0%)
Strand = Plus / Minus
Query: 453 acaggtttccatgccatggcaatcgaaatgattccccacccagttggcacaaatgctaga 512
||||| ||||| |||| || ||||||| |||||||| ||||| || ||| |||| |||
Sbjct: 433 acaggcttccacgccacagcgatcgaaagaattccccatccagtaggaacatatgccaga 374
Query: 513 atggaagcaaaaacatctctcacactgagtttcgtaaacaaaattgccaggaccagagca 572
||| |||||| |||||| | | ||| ||| | ||| ||| |||||||| | | | ||
Sbjct: 373 atgaaagcaagtacatctgtaaaactaagtcttgtagacacaattgccacaattaaacca 314
Query: 573 gccaaaaccatcaataacgctacacttttgaccaaacgcaggaacaattggaaatgtacc 632
||||||||||| || | || | ||||||||| | |||||| | | ||||||||| |||
Sbjct: 313 gccaaaaccattaacagggcaatacttttgacaagacgcagcagtagttggaaatgaacc 254
Query: 633 atggccttggggtttaaaccaaagaccaagaggaggatgaaaagg-ccaccaagcacagc 691
|||||| |||||||||||| ||| |||| |||||||| ||||| || |||||||||||
Sbjct: 253 atggccctggggtttaaactaaataccattaggaggataaaaagcacctccaagcacagc 194
Query: 692 ccaagaaatccaatacaccaataaagctgtacttcctccgctagcattcatgtggtaaac 751
||| || | |||||| |||||||| | ||||||| | |||| |||| ||| ||||||||
Sbjct: 193 ccaggatacccaatataccaataatgatgtacttggttcgctggcatccatatggtaaac 134
Query: 752 aactccgaattggaaaatgaaaaacctcaggcttaatatggtttccagtatcctccctcg 811
|||||| | |||||||||||||| || | || | |||||| |||||||||||||| ||
Sbjct: 133 aactccatactggaaaatgaaaaatcttaaactaagtatggtctccagtatcctcccacg 74
Query: 812 aatgctgtaaatatgttgcagttcttcttcccaccaagcttcccagctttcttctccttt 871
| | | | |||||| ||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 73 gaaggtttggatatgtcccagttcttcatcccaccaggcttcccagcttgcatctccttt 14
Query: 872 aac 874
|||
Sbjct: 13 aac 11
>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
Length = 869
Score = 50.1 bits (25), Expect = 5e-006
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 291 cctctgctgaacgcctggttgaacagaagtcgcgtctggaa 331
|||||||||||||| || |||||||| | ||||||||||||
Sbjct: 640 cctctgctgaacgcttgattgaacagcattcgcgtctggaa 600
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1151 tacctgcccgggcggccgctcga 1173
|||||||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgctcga 1
>gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_F01_K02, mRNA sequence
Length = 414
Score = 34.2 bits (17), Expect = 0.27
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 291 cctctgctgaacgcctggttgaacagaagtcgcgtctggaa 331
||||| |||||||| || |||||||| | |||||||||||
Sbjct: 84 cctctactgaacgcttgattgaacagcatccgcgtctggaa 44
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3082
Number of Sequences: 8143
Number of extensions: 3082
Number of successful extensions: 812
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 4
length of query: 1174
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1158
effective length of database: 4,572,175
effective search space: 5294578650
effective search space used: 5294578650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)