BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Aven... 500 e-141
gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Aven... 40 0.004
gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Aven... 40 0.004
gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Aven... 40 0.004
gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Aven... 40 0.004
gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Aven... 40 0.004
gb|CN819064.1|CN819064 HRO4455_D10_G19ZS5 Lib AA070E1X Aven... 36 0.064
gb|CN820836.1|CN820836 HRO4420_D09_H18ZS5 Lib AA069E1X Aven... 36 0.064
>gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_D07_H13, mRNA sequence
Length = 735
Score = 500 bits (252), Expect = e-141
Identities = 408/460 (88%)
Strand = Plus / Plus
Query: 84 attgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagattcct 143
||||| |||||||||||||| || |||||||||||||||||||| || | | ||||||||
Sbjct: 12 attgaggatcctgatgaagtaaaaccagagggctatgattctattccgagagagattcct 71
Query: 144 gatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaagccc 203
|| || |||||||||||||||||||||||||| || ||||| ||||| || ||||| ||
Sbjct: 72 gacccaaaggacaaaaagcctgacacatgggacgacgatgatgatggcatttggaaacct 131
Query: 204 agaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcct 263
|||| | || | ||| |||||||||| ||| | ||||| ||||||| |||||| || |||
Sbjct: 132 agaaggataccgaattcagcatacaaaggaacatggaagcgcaagaaaattaagaaccct 191
Query: 264 aactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgatcca 323
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 192 aactacaagggtaaatggaagaccccatggattgataatccagagtttgaggatgatcca 251
Query: 324 gatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagct 383
||| | || || ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 252 gatttatacgtactgaaacctttgaagtatattggaatcgaagtttggcaggtaaaagct 311
Query: 384 ggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgtt 443
||||||||||| ||||||||||| |||||||||||||| |||||||||| || | || |
Sbjct: 312 ggttcagtttttgacaacattctcatttgtgatgacccggagtatgcaaaaagagctgct 371
Query: 444 gaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaag 503
|| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 372 gaagaaacatggggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaag 431
Query: 504 gagaggaaagctagggaggatagggaaggtcaaaaggcaa 543
|||||||||||||| || |||| ||||| |||| ||||||
Sbjct: 432 gagaggaaagctagagaagataaggaagctcaacaggcaa 471
Score = 52.0 bits (26), Expect = 1e-006
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 556 acagggatcactgggatgactaccatgatgagct 589
>gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B05_C10, mRNA sequence
Length = 838
Score = 40.1 bits (20), Expect = 0.004
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||||||||| ||||| | |||| ||| || || |||||||| ||||||||||||||
Sbjct: 269 tacaagggaccatggaagcaaaagaaaatgaagaaccctaactatcagggtaaatggaag 328
Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 105 aagccagagggctatgat 122
||||||||||||||||||
Sbjct: 149 aagccagagggctatgat 166
>gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_D03_G05, mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.004
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||||||||| ||||| | |||| ||| || || |||||||| ||||||||||||||
Sbjct: 48 tacaagggaccatggaagcaaaagaaaatgaagaaccctaactatcagggtaaatggaag 107
>gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_F11_K22, mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.004
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||||||||| ||||| | |||| ||| || || |||||||| ||||||||||||||
Sbjct: 201 tacaagggaccatggaagcaaaagaaaatgaagaaccctaactatcagggtaaatggaag 260
Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 105 aagccagagggctatgat 122
||||||||||||||||||
Sbjct: 81 aagccagagggctatgat 98
>gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H06_O11, mRNA sequence
Length = 856
Score = 40.1 bits (20), Expect = 0.004
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||||||||| ||||| | |||| ||| || || |||||||| ||||||||||||||
Sbjct: 347 tacaagggaccatggaagcaaaagaaaatgaagaaccctaactatcagggtaaatggaag 406
Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 105 aagccagagggctatgat 122
||||||||||||||||||
Sbjct: 227 aagccagagggctatgat 244
>gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_E12_J23, mRNA
sequence
Length = 807
Score = 40.1 bits (20), Expect = 0.004
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||||||||| ||||| | |||| ||| || || |||||||| ||||||||||||||
Sbjct: 604 tacaagggaccatggaagcaaaagaaaatgaagaaccctaactatcagggtaaatggaag 545
Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 105 aagccagagggctatgat 122
||||||||||||||||||
Sbjct: 724 aagccagagggctatgat 707
>gb|CN819064.1|CN819064 HRO4455_D10_G19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_D10_G19, mRNA sequence
Length = 468
Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 316 atgatccagatctttatg 333
||||||||||||||||||
Sbjct: 76 atgatccagatctttatg 93
>gb|CN820836.1|CN820836 HRO4420_D09_H18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_D09_H18, mRNA
sequence
Length = 602
Score = 36.2 bits (18), Expect = 0.064
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 393 ttcgacaacattctgatttgtgatgaccctgagtatgc 430
||||||||||| ||||| |||||||||||||||||
Sbjct: 384 ttcgacaacatcctgatcacggatgaccctgagtatgc 421
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3251
Number of Sequences: 8143
Number of extensions: 3251
Number of successful extensions: 829
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 25
length of query: 1094
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1078
effective length of database: 4,572,175
effective search space: 4928804650
effective search space used: 4928804650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)