BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012915.2.2
(621 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 66 4e-011
gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Aven... 38 0.009
gb|CN815898.1|CN815898 HRO4511_F12_L23ZS5 Lib AA071E1X Aven... 34 0.14
gb|CN820707.1|CN820707 HRO4416_F03_L06ZS5 Lib AA069E1X Aven... 34 0.14
emb|AJ011901.1|ASA011901 Avena sativa mitochondrial trnP(TG... 34 0.14
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 65.9 bits (33), Expect = 4e-011
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 363 agtcatggggatccatctggcgcctcgactccaaccaccgcctgcagccacccttctcca 422
|||| ||||| ||||||||| | | ||||||||||||||||| ||| | || |||||||
Sbjct: 98 agtcctgggggtccatctggaggatggactccaaccaccgcctccaggcgccattctcca 157
Query: 423 tccgcacccgcaccgactccggcaagacgctcgtcgcacgcgacgtcatcccactcaact 482
| |||| | || ||||||||||||| ||||||||| | || |||||||| |||||
Sbjct: 158 tgcgcatcaccagcgactccggcaagcagctcgtcgccaacaacatcatcccagccaact 217
Query: 483 ggaggccaaacac 495
||||||| |||||
Sbjct: 218 ggaggcccaacac 230
>gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C08_F16, mRNA sequence
Length = 443
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 436 cgactccggcaagacgctc 454
|||||||||||||||||||
Sbjct: 30 cgactccggcaagacgctc 48
>gb|CN815898.1|CN815898 HRO4511_F12_L23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_F12_L23, mRNA sequence
Length = 512
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 243 tcgaggaaggctccacccagg 263
|||||||||||| ||||||||
Sbjct: 253 tcgaggaaggctgcacccagg 273
>gb|CN820707.1|CN820707 HRO4416_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_F03_L06, mRNA
sequence
Length = 475
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 243 tcgaggaaggctccacccagg 263
|||||||||||| ||||||||
Sbjct: 197 tcgaggaaggctgcacccagg 217
>emb|AJ011901.1|ASA011901 Avena sativa mitochondrial trnP(TGG) gene
Length = 194
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 601 tcgatcgggtagatcgatatg 621
||||||||||||||| |||||
Sbjct: 15 tcgatcgggtagatccatatg 35
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1267
Number of Sequences: 8143
Number of extensions: 1267
Number of successful extensions: 350
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 6
length of query: 621
length of database: 4,702,463
effective HSP length: 16
effective length of query: 605
effective length of database: 4,572,175
effective search space: 2766165875
effective search space used: 2766165875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)