BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2945733.2.1
(885 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816660.1|CN816660 HRO4523_C12_F23ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN820597.1|CN820597 HRO4415_C07_F13ZS5 Lib AA069E1X Aven... 34 0.20
gb|CN820772.1|CN820772 HRO4414_F03_K06ZS5 Lib AA069E1X Aven... 34 0.20
>gb|CN816660.1|CN816660 HRO4523_C12_F23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_C12_F23, mRNA sequence
Length = 805
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 371 accccaagctcaagacg 387
|||||||||||||||||
Sbjct: 739 accccaagctcaagacg 723
>gb|CN820597.1|CN820597 HRO4415_C07_F13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_C07_F13, mRNA
sequence
Length = 385
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 132 gagaagccagcacgaca 148
|||||||||||||||||
Sbjct: 137 gagaagccagcacgaca 121
>gb|CN820772.1|CN820772 HRO4414_F03_K06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_F03_K06, mRNA
sequence
Length = 757
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 132 gagaagccagcacgaca 148
|||||||||||||||||
Sbjct: 550 gagaagccagcacgaca 534
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1951
Number of Sequences: 8143
Number of extensions: 1951
Number of successful extensions: 482
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 4
length of query: 885
length of database: 4,702,463
effective HSP length: 16
effective length of query: 869
effective length of database: 4,572,175
effective search space: 3973220075
effective search space used: 3973220075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)