BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943966.2.1
(599 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 121 8e-028
gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Aven... 101 7e-022
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 121 bits (61), Expect = 8e-028
Identities = 121/141 (85%)
Strand = Plus / Minus
Query: 452 gtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgag 511
|||||| |||| ||||||| |||||| |||||||||||| |||||||||||| |||| |
Sbjct: 170 gtggtagttgaggtagttgtccttgtccgcgtcgacgaagacgaagtcgaaggtgccgtg 111
Query: 512 gttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtc 571
|||||||||||| |||| ||| ||||||| | ||||||||||||||||||||||||
Sbjct: 110 gttggcctcgtcctcgagcagcgcgtccagcacgggcagcgcggggccctcgcggaagtc 51
Query: 572 gaccttgcccgccacgccggc 592
|| |||| ||||||||||||
Sbjct: 50 gatcttgtgcgccacgccggc 30
Score = 36.2 bits (18), Expect = 0.034
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 392 ccagagcgtgttgtcgta 409
||||||||||||||||||
Sbjct: 230 ccagagcgtgttgtcgta 213
>gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H08_O16, mRNA sequence
Length = 372
Score = 101 bits (51), Expect = 7e-022
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 226 atcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaa 285
||||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||| |
Sbjct: 128 atcagacgaggcgacggcagatggtgaccccatcggcgatggcgagctggcagacctcga 69
Query: 286 cgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacct 340
|||| ||| |||| ||| | |||||||||||||||||||||| ||||||||
Sbjct: 68 tgcgcgggtcggcggcgagcctggcgttgaggtccctgatggcggcggagaacct 14
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1201
Number of Sequences: 8143
Number of extensions: 1201
Number of successful extensions: 378
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 4
length of query: 599
length of database: 4,702,463
effective HSP length: 16
effective length of query: 583
effective length of database: 4,572,175
effective search space: 2665578025
effective search space used: 2665578025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)