BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2943856.2.2
         (661 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816688.1|CN816688  HRO4523_F05_L09ZS5 Lib AA071E1X Aven...   145   6e-035
gb|CN820049.1|CN820049  HRO4410_E07_I14ZS5 Lib AA069E1X Aven...    36   0.038
gb|CN816725.1|CN816725  HRO4524_A10_B20ZS5 Lib AA071E1X Aven...    34   0.15 
gb|CN817866.1|CN817866  HRO4462_D12_H24ZS5 Lib AA070E1X Aven...    34   0.15 
gb|CN819065.1|CN819065  HRO4455_D11_G21ZS5 Lib AA070E1X Aven...    34   0.15 
gb|CN821026.1|CN821026  HRO4422_F12_K24ZS5 Lib AA069E1X Aven...    34   0.15 

>gb|CN816688.1|CN816688 HRO4523_F05_L09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4523_F05_L09, mRNA sequence
          Length = 632

 Score =  145 bits (73), Expect = 6e-035
 Identities = 157/185 (84%)
 Strand = Plus / Plus

                                                                       
Query: 134 gatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 193
           |||||| ||||| ||||| |||||||||||||||||||| || || |||||||||||| |
Sbjct: 3   gatcgaccggtcagtggttgagagcttcggcgcgggagggaaaacctgcatcctgtcaag 62

                                                                       
Query: 194 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 253
           ||||||||||||||| ||  | ||||| ||||| |||||  |||| ||||||||||| | 
Sbjct: 63  ggtgtacccgtccatggcgttagggaaagacgcgcaccttcacgtgttcaacaacggggc 122

                                                                       
Query: 254 ggtggacgtcacggtgtccggcctgaccgcctgggagatgaagaaaccgctgatgaacgg 313
           |  |||  ||| ||||||| |||||||||| |||||||||||||||||  ||||||| ||
Sbjct: 123 gacggatatcaaggtgtcccgcctgaccgcgtgggagatgaagaaaccattgatgaatgg 182

                
Query: 314 cgcct 318
           |||||
Sbjct: 183 cgcct 187



>gb|CN820049.1|CN820049 HRO4410_E07_I14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4410_E07_I14, mRNA
           sequence
          Length = 457

 Score = 36.2 bits (18), Expect = 0.038
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 379 ttcttcttcttcttcgtc 396
           ||||||||||||||||||
Sbjct: 280 ttcttcttcttcttcgtc 297



>gb|CN816725.1|CN816725 HRO4524_A10_B20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4524_A10_B20, mRNA sequence
          Length = 775

 Score = 34.2 bits (17), Expect = 0.15
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 373 ttttcgttcttcttcttcttc 393
           ||||| |||||||||||||||
Sbjct: 567 ttttccttcttcttcttcttc 547



>gb|CN817866.1|CN817866 HRO4462_D12_H24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4462_D12_H24, mRNA sequence
          Length = 352

 Score = 34.2 bits (17), Expect = 0.15
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 377 cgttcttcttcttcttc 393
           |||||||||||||||||
Sbjct: 252 cgttcttcttcttcttc 268



>gb|CN819065.1|CN819065 HRO4455_D11_G21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4455_D11_G21, mRNA sequence
          Length = 382

 Score = 34.2 bits (17), Expect = 0.15
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 377 cgttcttcttcttcttc 393
           |||||||||||||||||
Sbjct: 272 cgttcttcttcttcttc 288



>gb|CN821026.1|CN821026 HRO4422_F12_K24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_F12_K24, mRNA
           sequence
          Length = 644

 Score = 34.2 bits (17), Expect = 0.15
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 380 tcttcttcttcttcgtc 396
           |||||||||||||||||
Sbjct: 38  tcttcttcttcttcgtc 22



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1861
Number of Sequences: 8143
Number of extensions: 1861
Number of successful extensions: 580
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 15
length of query: 661
length of database: 4,702,463
effective HSP length: 16
effective length of query: 645
effective length of database: 4,572,175
effective search space: 2949052875
effective search space used: 2949052875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)