BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816752.1|CN816752 HRO4524_D04_H08ZS5 Lib AA071E1X Aven... 46 2e-004
gb|CN820657.1|CN820657 HRO4415_H08_P15ZS5 Lib AA069E1X Aven... 42 0.002
gb|CN821308.1|CN821308 HRO4423_H03_P05ZS5 Lib AA069E1X Aven... 42 0.002
gb|CN816017.1|CN816017 HRO4516_A03_B06ZS5 Lib AA071E1X Aven... 36 0.15
gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene ... 36 0.15
>gb|CN816752.1|CN816752 HRO4524_D04_H08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D04_H08, mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 2e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 478 gacattggtggcctgaattctgg 500
|||||||||||||||||||||||
Sbjct: 107 gacattggtggcctgaattctgg 85
>gb|CN820657.1|CN820657 HRO4415_H08_P15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_H08_P15, mRNA
sequence
Length = 788
Score = 42.1 bits (21), Expect = 0.002
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 664 ctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaaca 723
|||||| ||||| |||||||||| | ||||| | ||| || || ||||| |||||||||
Sbjct: 220 ctgtcatatggtttacgtcctgtaagaagttccaacataacgacgccaaaactgtaaaca 161
Query: 724 tcact 728
|||||
Sbjct: 160 tcact 156
Score = 40.1 bits (20), Expect = 0.010
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 481 attggtggcctgaattctgg 500
||||||||||||||||||||
Sbjct: 403 attggtggcctgaattctgg 384
>gb|CN821308.1|CN821308 HRO4423_H03_P05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_H03_P05, mRNA
sequence
Length = 475
Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 481 attggtggcctgaattctggttcaggctg 509
|||||||||||||||||||| ||| ||||
Sbjct: 86 attggtggcctgaattctggctcatgctg 58
>gb|CN816017.1|CN816017 HRO4516_A03_B06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A03_B06, mRNA sequence
Length = 568
Score = 36.2 bits (18), Expect = 0.15
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 38 tttccactgtgcaacttgtttc 59
||||||| ||||||||||||||
Sbjct: 133 tttccacagtgcaacttgtttc 154
>gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene cluster, complete
sequence
Length = 10607
Score = 36.2 bits (18), Expect = 0.15
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 709 ccaaagctgtaaacatca 726
||||||||||||||||||
Sbjct: 9388 ccaaagctgtaaacatca 9405
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8187
Number of Sequences: 8143
Number of extensions: 8187
Number of successful extensions: 2184
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2173
Number of HSP's gapped (non-prelim): 11
length of query: 2639
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2622
effective length of database: 4,564,032
effective search space: 11966891904
effective search space used: 11966891904
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)