BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816344.1|CN816344 HRO4519_F08_L15ZS5 Lib AA071E1X Aven... 103 2e-022
gb|CN816486.1|CN816486 HRO4521_C09_E17ZS5 Lib AA071E1X Aven... 66 4e-011
gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Aven... 58 1e-008
gb|CN818639.1|CN818639 HRO4457_G03_N05ZS5 Lib AA070E1X Aven... 38 0.009
gb|CN819715.1|CN819715 HRO4403_C08_F15ZS5 Lib AA069E1X Aven... 36 0.037
gb|CN816321.1|CN816321 HRO4519_D08_H15ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN821377.1|CN821377 HRO4424_F05_L10ZS5 Lib AA069E1X Aven... 34 0.15
>gb|CN816344.1|CN816344 HRO4519_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_F08_L15, mRNA sequence
Length = 261
Score = 103 bits (52), Expect = 2e-022
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 311 ggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatg 370
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 3 ggcgtcgtgctcccccacaaggagatcaagtccagcatactcaagcccgagatcgtcatg 62
Query: 371 tgat 374
||||
Sbjct: 63 tgat 66
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 507 tgtctgcaagtgtaacca 524
||||||||||||||||||
Sbjct: 190 tgtctgcaagtgtaacca 207
>gb|CN816486.1|CN816486 HRO4521_C09_E17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C09_E17, mRNA sequence
Length = 431
Score = 65.9 bits (33), Expect = 4e-011
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 297 tctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagc 356
|||||||||| || || || || || || ||||| |||||||| || |||||||| ||||
Sbjct: 225 tctacagcaatggtggtgttgttctaccacacaaagagatcaagtcaagcatcctgaagc 284
Query: 357 ccgagatcgtcatgtga 373
|||||||||||||||||
Sbjct: 285 ccgagatcgtcatgtga 301
>gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_B12_C23, mRNA sequence
Length = 781
Score = 58.0 bits (29), Expect = 1e-008
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 297 tctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagc 356
|||||||||| || || || || || || ||||| |||||||| || |||||||| ||||
Sbjct: 525 tctacagcaatggtggtgttgttctaccacacaaagagatcaagtcaagcatcctgaagc 584
Query: 357 ccgagatcgtcatgtga 373
| |||||||||||||||
Sbjct: 585 ctgagatcgtcatgtga 601
>gb|CN818639.1|CN818639 HRO4457_G03_N05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4457_G03_N05, mRNA
sequence
Length = 427
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 ttcggcacgaggccaggct 21
|||||||||||||||||||
Sbjct: 1 ttcggcacgaggccaggct 19
>gb|CN819715.1|CN819715 HRO4403_C08_F15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C08_F15, mRNA
sequence
Length = 501
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 attcggcacgaggccagg 19
||||||||||||||||||
Sbjct: 1 attcggcacgaggccagg 18
>gb|CN816321.1|CN816321 HRO4519_D08_H15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4519_D08_H15, mRNA sequence
Length = 429
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggcca 17
|||||||||||||||||
Sbjct: 2 aattcggcacgaggcca 18
>gb|CN821377.1|CN821377 HRO4424_F05_L10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_F05_L10, mRNA
sequence
Length = 308
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 ttcggcacgaggccagg 19
|||||||||||||||||
Sbjct: 1 ttcggcacgaggccagg 17
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3892
Number of Sequences: 8143
Number of extensions: 3892
Number of successful extensions: 1749
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1740
Number of HSP's gapped (non-prelim): 9
length of query: 649
length of database: 4,702,463
effective HSP length: 16
effective length of query: 633
effective length of database: 4,572,175
effective search space: 2894186775
effective search space used: 2894186775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)