BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2823202.2.1
         (529 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK780256.1|CK780256  umn249 UMN cDNA from oat Avena sativ...    38   0.008
gb|CK780281.1|CK780281  umn753 UMN cDNA from oat Avena sativ...    38   0.008
gb|CK780288.1|CK780288  umn162 UMN cDNA from oat Avena sativ...    38   0.008

>gb|CK780256.1|CK780256 umn249 UMN cDNA from oat Avena sativa cDNA clone JMT4_F01 5', mRNA
           sequence
          Length = 592

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 417 ctggcaatattgtaacttc 435
           |||||||||||||||||||
Sbjct: 127 ctggcaatattgtaacttc 109



>gb|CK780281.1|CK780281 umn753 UMN cDNA from oat Avena sativa cDNA clone JMT14 5', mRNA
           sequence
          Length = 515

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 417 ctggcaatattgtaacttc 435
           |||||||||||||||||||
Sbjct: 53  ctggcaatattgtaacttc 35



>gb|CK780288.1|CK780288 umn162 UMN cDNA from oat Avena sativa cDNA clone JMT6 5', mRNA
           sequence
          Length = 597

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 417 ctggcaatattgtaacttc 435
           |||||||||||||||||||
Sbjct: 128 ctggcaatattgtaacttc 110



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1147
Number of Sequences: 8143
Number of extensions: 1147
Number of successful extensions: 319
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 3
length of query: 529
length of database: 4,702,463
effective HSP length: 16
effective length of query: 513
effective length of database: 4,572,175
effective search space: 2345525775
effective search space used: 2345525775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)