BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763121.2.1
(1190 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Aven... 50 5e-006
gb|CN815631.1|CN815631 HRO4513_G09_M17ZS5 Lib AA071E1X Aven... 42 0.001
gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidas... 42 0.001
gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidas... 42 0.001
gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Aven... 36 0.069
gb|CN818961.1|CN818961 HRO4474_G04_N08ZS5 Lib AA070E1X Aven... 34 0.27
gb|CN820583.1|CN820583 HRO4415_B03_D05ZS5 Lib AA069E1X Aven... 34 0.27
>gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D04_H07, mRNA sequence
Length = 721
Score = 50.1 bits (25), Expect = 5e-006
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 895 cttcgcgcagtccatgatcaacatggggaacatcaagccgctcac 939
|||||||||||||||| | |||||||| ||||||| ||| |||||
Sbjct: 457 cttcgcgcagtccatggtgaacatgggtaacatcatgcctctcac 501
>gb|CN815631.1|CN815631 HRO4513_G09_M17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_G09_M17, mRNA sequence
Length = 389
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 899 gcgcagtccatgatcaacatggggaacatcaagccgctcac 939
|||||||||||| | |||||||| ||||||| ||| |||||
Sbjct: 113 gcgcagtccatggtgaacatgggcaacatcatgcccctcac 153
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
complete cds
Length = 1191
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgctt 204
|||| ||||||||||||||||||||
Sbjct: 182 tccggctgcacttccacgactgctt 206
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
complete cds
Length = 1197
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgctt 204
|||| ||||||||||||||||||||
Sbjct: 182 tccggctgcacttccacgactgctt 206
>gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A06_B11, mRNA sequence
Length = 737
Score = 36.2 bits (18), Expect = 0.069
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 747 ccttcgacaacaactactacaccaac 772
||||||||||| |||||||||||||
Sbjct: 298 ccttcgacaacgcctactacaccaac 323
>gb|CN818961.1|CN818961 HRO4474_G04_N08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_G04_N08, mRNA sequence
Length = 694
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1104 catgcagcatgcatgta 1120
|||||||||||||||||
Sbjct: 342 catgcagcatgcatgta 326
>gb|CN820583.1|CN820583 HRO4415_B03_D05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_B03_D05, mRNA
sequence
Length = 637
Score = 34.2 bits (17), Expect = 0.27
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 803 gaccaggagctcaagtcgtcg 823
||||||||||||||| |||||
Sbjct: 320 gaccaggagctcaaggcgtcg 340
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2743
Number of Sequences: 8143
Number of extensions: 2743
Number of successful extensions: 657
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 15
length of query: 1190
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1174
effective length of database: 4,572,175
effective search space: 5367733450
effective search space used: 5367733450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)