BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817065.1|CN817065 HRO4527_H02_P03ZS5 Lib AA071E1X Aven... 34 0.26
gb|CN821619.1|CN821619 HRO4408_D01_H02ZS5 Lib AA069E1X Aven... 34 0.26
>gb|CN817065.1|CN817065 HRO4527_H02_P03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_H02_P03, mRNA sequence
Length = 621
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 630 ggaaatgtggatcctga 646
|||||||||||||||||
Sbjct: 110 ggaaatgtggatcctga 94
>gb|CN821619.1|CN821619 HRO4408_D01_H02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D01_H02, mRNA
sequence
Length = 661
Score = 34.2 bits (17), Expect = 0.26
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 262 tggctggagtgtttttgttag 282
||||||||||||| |||||||
Sbjct: 233 tggctggagtgttattgttag 213
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2815
Number of Sequences: 8143
Number of extensions: 2815
Number of successful extensions: 780
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 2
length of query: 1126
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1110
effective length of database: 4,572,175
effective search space: 5075114250
effective search space used: 5075114250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)