BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2647492.2.1
         (1179 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK780260.1|CK780260  umn295 UMN cDNA from oat Avena sativ...    36   0.069
gb|CK780265.1|CK780265  umn356 UMN cDNA from oat Avena sativ...    36   0.069

>gb|CK780260.1|CK780260 umn295 UMN cDNA from oat Avena sativa cDNA clone JMT4_F05 5', mRNA
            sequence
          Length = 643

 Score = 36.2 bits (18), Expect = 0.069
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 992  atgttccagaatggcgaa 1009
            ||||||||||||||||||
Sbjct: 117  atgttccagaatggcgaa 100



>gb|CK780265.1|CK780265 umn356 UMN cDNA from oat Avena sativa cDNA clone JMT4_F10 5', mRNA
            sequence
          Length = 715

 Score = 36.2 bits (18), Expect = 0.069
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 992  atgttccagaatggcgaa 1009
            ||||||||||||||||||
Sbjct: 366  atgttccagaatggcgaa 349



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2708
Number of Sequences: 8143
Number of extensions: 2708
Number of successful extensions: 820
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 2
length of query: 1179
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1163
effective length of database: 4,572,175
effective search space: 5317439525
effective search space used: 5317439525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)