BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.4
(1628 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821541.1|CN821541 HRO4426_E02_I04ZS5 Lib AA069E1X Aven... 36 0.095
gb|CN814939.1|CN814939 HRO4504_B05_D10ZS5 Lib AA071E1X Aven... 34 0.37
gb|CN815509.1|CN815509 HRO4512_D10_H20ZS5 Lib AA071E1X Aven... 34 0.37
gb|CN816574.1|CN816574 HRO4522_C11_E22ZS5 Lib AA071E1X Aven... 34 0.37
gb|CN817838.1|CN817838 HRO4462_G05_N10ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN818168.1|CN818168 HRO4456_G05_M10ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN820110.1|CN820110 HRO4411_C01_F01ZS5 Lib AA069E1X Aven... 34 0.37
>gb|CN821541.1|CN821541 HRO4426_E02_I04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_E02_I04, mRNA
sequence
Length = 470
Score = 36.2 bits (18), Expect = 0.095
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 618 tgctgatcaaggacgtgaccgtgacg 643
||||||||||||| ||||| ||||||
Sbjct: 289 tgctgatcaaggaggtgactgtgacg 314
>gb|CN814939.1|CN814939 HRO4504_B05_D10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_B05_D10, mRNA sequence
Length = 607
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 802 cggcatcagcatcggca 818
|||||||||||||||||
Sbjct: 124 cggcatcagcatcggca 108
>gb|CN815509.1|CN815509 HRO4512_D10_H20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_D10_H20, mRNA sequence
Length = 572
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 128 gcgaaagcgtccgggcc 144
|||||||||||||||||
Sbjct: 391 gcgaaagcgtccgggcc 407
>gb|CN816574.1|CN816574 HRO4522_C11_E22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_C11_E22, mRNA sequence
Length = 655
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1053 tcaccgtcaaggacgtc 1069
|||||||||||||||||
Sbjct: 56 tcaccgtcaaggacgtc 72
>gb|CN817838.1|CN817838 HRO4462_G05_N10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_G05_N10, mRNA sequence
Length = 758
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 965 atcaagatggaggactc 981
|||||||||||||||||
Sbjct: 250 atcaagatggaggactc 266
>gb|CN818168.1|CN818168 HRO4456_G05_M10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_G05_M10, mRNA sequence
Length = 484
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 501 actgcaagatccttccc 517
|||||||||||||||||
Sbjct: 203 actgcaagatccttccc 187
>gb|CN820110.1|CN820110 HRO4411_C01_F01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_C01_F01, mRNA
sequence
Length = 558
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 501 actgcaagatccttccc 517
|||||||||||||||||
Sbjct: 264 actgcaagatccttccc 248
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4073
Number of Sequences: 8143
Number of extensions: 4073
Number of successful extensions: 1312
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 8
length of query: 1628
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1611
effective length of database: 4,564,032
effective search space: 7352655552
effective search space used: 7352655552
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)