BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2623051.2.1
         (991 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815328.1|CN815328  HRO4508_E01_J02ZS5 Lib AA071E1X Aven...    90   4e-018
gb|CN817105.1|CN817105  HRO4528_C07_F14ZS5 Lib AA071E1X Aven...    36   0.057
gb|CN819648.1|CN819648  HRO4402_E12_I24ZS5 Lib AA069E1X Aven...    36   0.057
gb|CN817075.1|CN817075  HRO4527_H12_P23ZS5 Lib AA071E1X Aven...    34   0.23 
gb|AF140554.1|AF140554  Avena sativa DNA-binding protein WRK...    34   0.23 

>gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4508_E01_J02, mRNA sequence
          Length = 229

 Score = 89.7 bits (45), Expect = 4e-018
 Identities = 48/49 (97%)
 Strand = Plus / Minus

                                                            
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
           ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgagcaggtcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 129



>gb|CN817105.1|CN817105 HRO4528_C07_F14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4528_C07_F14, mRNA sequence
          Length = 691

 Score = 36.2 bits (18), Expect = 0.057
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 713 gaagatgaggaggaggatgacg 734
           ||||||||||| ||||||||||
Sbjct: 478 gaagatgaggatgaggatgacg 499



>gb|CN819648.1|CN819648 HRO4402_E12_I24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4402_E12_I24, mRNA
           sequence
          Length = 535

 Score = 36.2 bits (18), Expect = 0.057
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 713 gaagatgaggaggaggatgacg 734
           ||||||||||| ||||||||||
Sbjct: 290 gaagatgaggatgaggatgacg 311



>gb|CN817075.1|CN817075 HRO4527_H12_P23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_H12_P23, mRNA sequence
          Length = 357

 Score = 34.2 bits (17), Expect = 0.23
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 234 tcgtagacagcctcctc 250
           |||||||||||||||||
Sbjct: 49  tcgtagacagcctcctc 65



>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
          Length = 2073

 Score = 34.2 bits (17), Expect = 0.23
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 258 tgctctccggcgccgtc 274
           |||||||||||||||||
Sbjct: 371 tgctctccggcgccgtc 355



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2851
Number of Sequences: 8143
Number of extensions: 2851
Number of successful extensions: 663
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 6
length of query: 991
length of database: 4,702,463
effective HSP length: 16
effective length of query: 975
effective length of database: 4,572,175
effective search space: 4457870625
effective search space used: 4457870625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)