BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2622915.2.1
         (584 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816483.1|CN816483  HRO4521_C06_E11ZS5 Lib AA071E1X Aven...    38   0.008
gb|CN820984.1|CN820984  HRO4422_B12_C24ZS5 Lib AA069E1X Aven...    36   0.033

>gb|CN816483.1|CN816483 HRO4521_C06_E11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_C06_E11, mRNA sequence
          Length = 356

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 405 accagtccatgtaaacaaa 423
           |||||||||||||||||||
Sbjct: 25  accagtccatgtaaacaaa 7



>gb|CN820984.1|CN820984 HRO4422_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_B12_C24, mRNA
           sequence
          Length = 551

 Score = 36.2 bits (18), Expect = 0.033
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 461 cggtgatggtagtcatgg 478
           ||||||||||||||||||
Sbjct: 65  cggtgatggtagtcatgg 48



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1505
Number of Sequences: 8143
Number of extensions: 1505
Number of successful extensions: 436
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 2
length of query: 584
length of database: 4,702,463
effective HSP length: 16
effective length of query: 568
effective length of database: 4,572,175
effective search space: 2596995400
effective search space used: 2596995400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)